Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3816 and GFF3817 are separated by 216 nucleotides GFF3817 and GFF3818 are separated by 5 nucleotides GFF3818 and GFF3819 are separated by 9 nucleotides GFF3819 and GFF3820 overlap by 4 nucleotides
GFF3816 - Aldo-keto reductase, at 720,196 to 721,194
GFF3816
GFF3817 - hypothetical protein, at 721,411 to 721,872
GFF3817
GFF3818 - hypothetical protein, at 721,878 to 722,180
GFF3818
GFF3819 - DNA-binding response regulator, at 722,190 to 722,897
GFF3819
GFF3820 - Adenylate cyclase (EC 4.6.1.1), at 722,894 to 724,270
GFF3820
Position (kb) 722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 721.190 kb on - strand at 721.190 kb on - strand at 721.316 kb on - strand at 721.322 kb on - strand at 721.792 kb on + strand, within GFF3817 at 721.792 kb on + strand, within GFF3817 at 721.793 kb on - strand, within GFF3817 at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.247 kb on + strand at 722.248 kb on - strand at 722.248 kb on - strand at 722.248 kb on - strand at 722.481 kb on + strand, within GFF3819 at 722.482 kb on - strand, within GFF3819 at 722.482 kb on - strand, within GFF3819 at 722.778 kb on + strand, within GFF3819 at 722.779 kb on - strand, within GFF3819 at 722.865 kb on + strand at 723.074 kb on + strand, within GFF3820 at 723.074 kb on + strand, within GFF3820 at 723.075 kb on - strand, within GFF3820 at 723.075 kb on - strand, within GFF3820 at 723.391 kb on + strand, within GFF3820 at 723.392 kb on - strand, within GFF3820 at 723.434 kb on + strand, within GFF3820
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 721,190 - -0.6 721,190 - +0.1 721,316 - +0.8 721,322 - -0.8 721,792 + GFF3817 0.82 -0.4 721,792 + GFF3817 0.82 -1.8 721,793 - GFF3817 0.83 +0.6 722,247 + -0.2 722,247 + +0.8 722,247 + -0.0 722,247 + -0.2 722,247 + +0.5 722,247 + +1.8 722,248 - -0.1 722,248 - -1.3 722,248 - -0.4 722,481 + GFF3819 0.41 -1.1 722,482 - GFF3819 0.41 +1.1 722,482 - GFF3819 0.41 -0.6 722,778 + GFF3819 0.83 +0.1 722,779 - GFF3819 0.83 -0.8 722,865 + -1.1 723,074 + GFF3820 0.13 -0.3 723,074 + GFF3820 0.13 +0.1 723,075 - GFF3820 0.13 -0.5 723,075 - GFF3820 0.13 +0.1 723,391 + GFF3820 0.36 -1.0 723,392 - GFF3820 0.36 +0.7 723,434 + GFF3820 0.39 +0.1
Or see this region's nucleotide sequence