Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3712 and GFF3713 are separated by 3 nucleotides GFF3713 and GFF3714 overlap by 11 nucleotides GFF3714 and GFF3715 are separated by 4 nucleotides
GFF3712 - Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4), at 605,674 to 606,540
GFF3712
GFF3713 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4), at 606,544 to 607,020
GFF3713
GFF3714 - Carbon monoxide oxidation accessory protein CoxG, at 607,010 to 607,726
GFF3714
GFF3715 - Choline-sulfatase (EC 3.1.6.6), at 607,731 to 609,311
GFF3715
Position (kb) 607
608 Strain fitness (log2 ratio) -2
-1
0
1 at 606.136 kb on + strand, within GFF3712 at 606.136 kb on + strand, within GFF3712 at 606.137 kb on - strand, within GFF3712 at 606.137 kb on - strand, within GFF3712 at 606.139 kb on + strand, within GFF3712 at 606.140 kb on - strand, within GFF3712 at 607.139 kb on + strand, within GFF3714 at 607.139 kb on + strand, within GFF3714 at 607.140 kb on - strand, within GFF3714 at 607.140 kb on - strand, within GFF3714 at 607.140 kb on - strand, within GFF3714 at 607.724 kb on + strand at 607.724 kb on + strand at 607.724 kb on + strand at 607.876 kb on + strand at 608.200 kb on + strand, within GFF3715 at 608.650 kb on + strand, within GFF3715 at 608.651 kb on - strand, within GFF3715 at 608.651 kb on - strand, within GFF3715 at 608.651 kb on - strand, within GFF3715 at 608.662 kb on + strand, within GFF3715
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 606,136 + GFF3712 0.53 +0.8 606,136 + GFF3712 0.53 -1.8 606,137 - GFF3712 0.53 -0.2 606,137 - GFF3712 0.53 -0.3 606,139 + GFF3712 0.54 +0.0 606,140 - GFF3712 0.54 -0.2 607,139 + GFF3714 0.18 +0.8 607,139 + GFF3714 0.18 -1.5 607,140 - GFF3714 0.18 +0.8 607,140 - GFF3714 0.18 +0.2 607,140 - GFF3714 0.18 +1.0 607,724 + +1.6 607,724 + +0.6 607,724 + +0.1 607,876 + -0.7 608,200 + GFF3715 0.30 +0.4 608,650 + GFF3715 0.58 -0.1 608,651 - GFF3715 0.58 -0.0 608,651 - GFF3715 0.58 +0.6 608,651 - GFF3715 0.58 -0.3 608,662 + GFF3715 0.59 -0.4
Or see this region's nucleotide sequence