Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3621 and GFF3622 are separated by 123 nucleotides GFF3622 and GFF3623 are separated by 5 nucleotides GFF3623 and GFF3624 are separated by 34 nucleotides
GFF3621 - Transcriptional regulator, LysR family, at 508,862 to 509,761
GFF3621
GFF3622 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 509,885 to 510,274
GFF3622
GFF3623 - Endoribonuclease L-PSP, at 510,280 to 510,753
GFF3623
GFF3624 - Tricarboxylate transport protein TctC, at 510,788 to 511,759
GFF3624
Position (kb) 510
511 Strain fitness (log2 ratio) -1
0
1
2 at 509.457 kb on + strand, within GFF3621 at 509.458 kb on - strand, within GFF3621 at 509.458 kb on - strand, within GFF3621 at 509.568 kb on + strand, within GFF3621 at 509.569 kb on - strand, within GFF3621 at 509.734 kb on - strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.904 kb on - strand at 509.904 kb on - strand at 509.990 kb on + strand, within GFF3622 at 509.991 kb on - strand, within GFF3622 at 510.158 kb on + strand, within GFF3622 at 510.316 kb on - strand at 510.475 kb on + strand, within GFF3623 at 510.475 kb on + strand, within GFF3623 at 510.575 kb on - strand, within GFF3623 at 510.610 kb on + strand, within GFF3623 at 510.706 kb on + strand at 510.706 kb on + strand at 510.707 kb on - strand at 510.707 kb on - strand at 511.046 kb on + strand, within GFF3624 at 511.112 kb on + strand, within GFF3624 at 511.112 kb on + strand, within GFF3624 at 511.113 kb on - strand, within GFF3624 at 511.250 kb on + strand, within GFF3624 at 511.251 kb on - strand, within GFF3624 at 511.338 kb on - strand, within GFF3624 at 511.338 kb on - strand, within GFF3624 at 511.542 kb on - strand, within GFF3624
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 509,457 + GFF3621 0.66 -0.0 509,458 - GFF3621 0.66 +0.4 509,458 - GFF3621 0.66 +1.8 509,568 + GFF3621 0.78 +1.4 509,569 - GFF3621 0.79 -0.2 509,734 - -1.5 509,903 + -0.1 509,903 + -0.4 509,903 + -0.2 509,903 + -0.1 509,904 - -0.4 509,904 - -0.3 509,990 + GFF3622 0.27 -0.2 509,991 - GFF3622 0.27 -0.2 510,158 + GFF3622 0.70 +1.8 510,316 - -0.5 510,475 + GFF3623 0.41 +1.2 510,475 + GFF3623 0.41 +1.1 510,575 - GFF3623 0.62 -1.3 510,610 + GFF3623 0.70 +0.0 510,706 + -0.0 510,706 + -0.2 510,707 - -0.2 510,707 - -1.2 511,046 + GFF3624 0.27 +0.1 511,112 + GFF3624 0.33 -0.6 511,112 + GFF3624 0.33 -0.1 511,113 - GFF3624 0.33 -0.8 511,250 + GFF3624 0.48 -0.2 511,251 - GFF3624 0.48 +0.8 511,338 - GFF3624 0.57 +0.0 511,338 - GFF3624 0.57 +0.0 511,542 - GFF3624 0.78 -0.6
Or see this region's nucleotide sequence