Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3566 and GFF3567 are separated by 74 nucleotides GFF3567 and GFF3568 are separated by 3 nucleotides GFF3568 and GFF3569 are separated by 10 nucleotides GFF3569 and GFF3570 are separated by 104 nucleotides GFF3570 and GFF3571 are separated by 47 nucleotides
GFF3566 - 50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF), at 456,822 to 457,763
GFF3566
GFF3567 - NAD(P)H dehydrogenase, quinone family, at 457,838 to 458,431
GFF3567
GFF3568 - protein of unknown function DUF427, at 458,435 to 458,716
GFF3568
GFF3569 - hypothetical protein, at 458,727 to 458,867
GFF3569
GFF3570 - Thiol:disulfide interchange protein DsbG precursor, at 458,972 to 459,616
GFF3570
GFF3571 - Probable transmembrane protein, at 459,664 to 460,134
GFF3571
Position (kb) 458
459 Strain fitness (log2 ratio) -2
-1
0
1 at 457.922 kb on + strand, within GFF3567 at 457.922 kb on + strand, within GFF3567 at 457.922 kb on + strand, within GFF3567 at 457.923 kb on - strand, within GFF3567 at 457.923 kb on - strand, within GFF3567 at 458.259 kb on - strand, within GFF3567 at 458.267 kb on + strand, within GFF3567 at 458.268 kb on - strand, within GFF3567 at 458.268 kb on - strand, within GFF3567 at 458.511 kb on + strand, within GFF3568 at 458.511 kb on + strand, within GFF3568 at 458.511 kb on + strand, within GFF3568 at 458.512 kb on - strand, within GFF3568 at 458.560 kb on - strand, within GFF3568 at 458.562 kb on + strand, within GFF3568 at 458.562 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on + strand, within GFF3568 at 458.646 kb on - strand, within GFF3568 at 458.647 kb on - strand, within GFF3568 at 458.647 kb on - strand, within GFF3568 at 458.647 kb on - strand, within GFF3568 at 458.914 kb on + strand at 458.914 kb on + strand at 458.914 kb on + strand at 458.915 kb on - strand at 458.915 kb on - strand at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.370 kb on - strand, within GFF3570 at 459.370 kb on - strand, within GFF3570 at 459.720 kb on - strand, within GFF3571 at 459.720 kb on - strand, within GFF3571 at 459.764 kb on + strand, within GFF3571 at 459.765 kb on - strand, within GFF3571 at 459.765 kb on - strand, within GFF3571 at 459.797 kb on + strand, within GFF3571 at 459.797 kb on + strand, within GFF3571 at 459.798 kb on - strand, within GFF3571 at 459.798 kb on - strand, within GFF3571 at 459.827 kb on + strand, within GFF3571 at 459.863 kb on + strand, within GFF3571 at 459.863 kb on + strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.865 kb on + strand, within GFF3571 at 459.866 kb on + strand, within GFF3571 at 459.866 kb on + strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.867 kb on - strand, within GFF3571
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 457,922 + GFF3567 0.14 -0.2 457,922 + GFF3567 0.14 -2.0 457,922 + GFF3567 0.14 +0.1 457,923 - GFF3567 0.14 +1.6 457,923 - GFF3567 0.14 +0.2 458,259 - GFF3567 0.71 -1.3 458,267 + GFF3567 0.72 -1.2 458,268 - GFF3567 0.72 -0.8 458,268 - GFF3567 0.72 -2.1 458,511 + GFF3568 0.27 -0.2 458,511 + GFF3568 0.27 +0.2 458,511 + GFF3568 0.27 -0.2 458,512 - GFF3568 0.27 -0.4 458,560 - GFF3568 0.44 +0.1 458,562 + GFF3568 0.45 +0.1 458,562 + GFF3568 0.45 +0.1 458,646 + GFF3568 0.75 +0.7 458,646 + GFF3568 0.75 -0.6 458,646 + GFF3568 0.75 +0.0 458,646 + GFF3568 0.75 -0.0 458,646 + GFF3568 0.75 +0.3 458,646 - GFF3568 0.75 -0.4 458,647 - GFF3568 0.75 +0.3 458,647 - GFF3568 0.75 +0.0 458,647 - GFF3568 0.75 +1.2 458,914 + +0.3 458,914 + +0.2 458,914 + +0.6 458,915 - +0.4 458,915 - +0.8 459,369 + GFF3570 0.62 -0.2 459,369 + GFF3570 0.62 -0.9 459,369 + GFF3570 0.62 -0.4 459,369 + GFF3570 0.62 -0.0 459,369 + GFF3570 0.62 +1.1 459,369 + GFF3570 0.62 +0.1 459,369 + GFF3570 0.62 +0.8 459,370 - GFF3570 0.62 -0.2 459,370 - GFF3570 0.62 +0.8 459,720 - GFF3571 0.12 -2.6 459,720 - GFF3571 0.12 +0.1 459,764 + GFF3571 0.21 +1.1 459,765 - GFF3571 0.21 -0.2 459,765 - GFF3571 0.21 -0.6 459,797 + GFF3571 0.28 +1.3 459,797 + GFF3571 0.28 +0.2 459,798 - GFF3571 0.28 -0.6 459,798 - GFF3571 0.28 +0.4 459,827 + GFF3571 0.35 -0.1 459,863 + GFF3571 0.42 +0.1 459,863 + GFF3571 0.42 +0.1 459,864 - GFF3571 0.42 +0.0 459,864 - GFF3571 0.42 -0.5 459,864 - GFF3571 0.42 -0.2 459,865 + GFF3571 0.43 -1.2 459,866 + GFF3571 0.43 +0.8 459,866 + GFF3571 0.43 +1.6 459,867 - GFF3571 0.43 +0.0 459,867 - GFF3571 0.43 +0.2 459,867 - GFF3571 0.43 +0.3
Or see this region's nucleotide sequence