Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3509

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3508 and GFF3509 overlap by 22 nucleotidesGFF3509 and GFF3510 are separated by 76 nucleotides GFF3508 - SMART domain SM00020; serine protease-like, at 390,661 to 395,013 GFF3508 GFF3509 - DNA circulation protein, putative, at 394,992 to 396,449 GFF3509 GFF3510 - FIG01198748: hypothetical protein, at 396,526 to 398,232 GFF3510 Position (kb) 394 395 396 397Strain fitness (log2 ratio) -1 0 1at 394.005 kb on - strand, within GFF3508at 394.054 kb on - strand, within GFF3508at 394.054 kb on - strand, within GFF3508at 394.108 kb on + strand, within GFF3508at 394.108 kb on + strand, within GFF3508at 394.109 kb on - strand, within GFF3508at 394.142 kb on + strand, within GFF3508at 394.165 kb on + strand, within GFF3508at 394.166 kb on - strand, within GFF3508at 394.166 kb on - strand, within GFF3508at 394.198 kb on + strand, within GFF3508at 394.461 kb on + strand, within GFF3508at 394.461 kb on + strand, within GFF3508at 394.462 kb on - strand, within GFF3508at 394.474 kb on + strand, within GFF3508at 394.475 kb on - strand, within GFF3508at 394.475 kb on - strand, within GFF3508at 394.504 kb on + strand, within GFF3508at 394.504 kb on + strand, within GFF3508at 394.504 kb on + strand, within GFF3508at 394.742 kb on - strandat 394.782 kb on + strandat 394.943 kb on + strandat 394.943 kb on + strandat 394.944 kb on - strandat 395.127 kb on - strandat 395.209 kb on - strand, within GFF3509at 395.471 kb on + strand, within GFF3509at 395.487 kb on + strand, within GFF3509at 395.487 kb on + strand, within GFF3509at 395.487 kb on + strand, within GFF3509at 395.545 kb on - strand, within GFF3509at 395.647 kb on - strand, within GFF3509at 395.714 kb on + strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.715 kb on - strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.760 kb on + strand, within GFF3509at 395.761 kb on - strand, within GFF3509at 395.761 kb on - strand, within GFF3509at 396.013 kb on + strand, within GFF3509at 396.074 kb on - strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.102 kb on + strand, within GFF3509at 396.103 kb on - strand, within GFF3509at 396.135 kb on + strand, within GFF3509at 396.136 kb on - strand, within GFF3509at 396.248 kb on + strand, within GFF3509at 396.249 kb on - strand, within GFF3509at 396.260 kb on + strand, within GFF3509at 396.260 kb on + strand, within GFF3509at 396.261 kb on - strand, within GFF3509at 396.319 kb on + strandat 396.320 kb on - strandat 396.330 kb on + strandat 396.331 kb on - strandat 396.399 kb on + strandat 396.399 kb on + strandat 396.400 kb on - strandat 396.400 kb on - strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.426 kb on + strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.427 kb on - strandat 396.455 kb on - strandat 396.474 kb on + strandat 396.528 kb on - strandat 396.740 kb on + strand, within GFF3510at 396.740 kb on + strand, within GFF3510at 396.740 kb on + strand, within GFF3510at 396.741 kb on - strand, within GFF3510at 396.765 kb on - strand, within GFF3510at 396.777 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.887 kb on + strand, within GFF3510at 396.888 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.001 kb on - strand, within GFF3510at 397.079 kb on + strand, within GFF3510at 397.079 kb on + strand, within GFF3510at 397.080 kb on - strand, within GFF3510at 397.149 kb on - strand, within GFF3510at 397.149 kb on - strand, within GFF3510at 397.171 kb on + strand, within GFF3510at 397.259 kb on + strand, within GFF3510at 397.260 kb on - strand, within GFF3510at 397.260 kb on - strand, within GFF3510

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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394,005 - GFF3508 0.77 -0.2
394,054 - GFF3508 0.78 +0.3
394,054 - GFF3508 0.78 +1.4
394,108 + GFF3508 0.79 -0.2
394,108 + GFF3508 0.79 -0.6
394,109 - GFF3508 0.79 +0.6
394,142 + GFF3508 0.80 +0.2
394,165 + GFF3508 0.80 +0.3
394,166 - GFF3508 0.81 -0.1
394,166 - GFF3508 0.81 -0.2
394,198 + GFF3508 0.81 -1.5
394,461 + GFF3508 0.87 +0.8
394,461 + GFF3508 0.87 -0.4
394,462 - GFF3508 0.87 +0.5
394,474 + GFF3508 0.88 -0.3
394,475 - GFF3508 0.88 +0.8
394,475 - GFF3508 0.88 -0.5
394,504 + GFF3508 0.88 +0.1
394,504 + GFF3508 0.88 +0.3
394,504 + GFF3508 0.88 -0.7
394,742 - +0.6
394,782 + +0.7
394,943 + +0.3
394,943 + +0.5
394,944 - -0.0
395,127 - +0.4
395,209 - GFF3509 0.15 -0.8
395,471 + GFF3509 0.33 -0.3
395,487 + GFF3509 0.34 -0.2
395,487 + GFF3509 0.34 -0.2
395,487 + GFF3509 0.34 -0.5
395,545 - GFF3509 0.38 +0.5
395,647 - GFF3509 0.45 -0.8
395,714 + GFF3509 0.50 -0.6
395,715 - GFF3509 0.50 -0.3
395,715 - GFF3509 0.50 -0.2
395,715 - GFF3509 0.50 +0.6
395,760 + GFF3509 0.53 +0.6
395,760 + GFF3509 0.53 -0.6
395,760 + GFF3509 0.53 -0.4
395,760 + GFF3509 0.53 +0.2
395,761 - GFF3509 0.53 -0.1
395,761 - GFF3509 0.53 -0.0
396,013 + GFF3509 0.70 +1.4
396,074 - GFF3509 0.74 -0.2
396,102 + GFF3509 0.76 -0.3
396,102 + GFF3509 0.76 -0.2
396,102 + GFF3509 0.76 -1.1
396,103 - GFF3509 0.76 -0.4
396,135 + GFF3509 0.78 -1.5
396,136 - GFF3509 0.78 -0.9
396,248 + GFF3509 0.86 -0.2
396,249 - GFF3509 0.86 +0.7
396,260 + GFF3509 0.87 +0.8
396,260 + GFF3509 0.87 -0.0
396,261 - GFF3509 0.87 +0.3
396,319 + +0.1
396,320 - +0.5
396,330 + +0.1
396,331 - +0.4
396,399 + -0.2
396,399 + +0.5
396,400 - -0.2
396,400 - -0.9
396,426 + -1.2
396,426 + -0.0
396,426 + -0.6
396,426 + +1.1
396,426 + -0.7
396,426 + -0.3
396,427 - -0.4
396,427 - -0.2
396,427 - +0.1
396,427 - +1.3
396,427 - +0.3
396,455 - +0.4
396,474 + -0.5
396,528 - +0.2
396,740 + GFF3510 0.13 -0.6
396,740 + GFF3510 0.13 -0.6
396,740 + GFF3510 0.13 +1.0
396,741 - GFF3510 0.13 -0.1
396,765 - GFF3510 0.14 -0.5
396,777 + GFF3510 0.15 +0.8
396,887 + GFF3510 0.21 +0.0
396,887 + GFF3510 0.21 +0.4
396,887 + GFF3510 0.21 -0.2
396,888 - GFF3510 0.21 -0.4
397,001 - GFF3510 0.28 -0.0
397,001 - GFF3510 0.28 -0.5
397,001 - GFF3510 0.28 +0.4
397,079 + GFF3510 0.32 +1.5
397,079 + GFF3510 0.32 -0.7
397,080 - GFF3510 0.32 +0.3
397,149 - GFF3510 0.36 +0.2
397,149 - GFF3510 0.36 +0.5
397,171 + GFF3510 0.38 -0.3
397,259 + GFF3510 0.43 +0.6
397,260 - GFF3510 0.43 -0.2
397,260 - GFF3510 0.43 -0.1

Or see this region's nucleotide sequence