Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3471 and GFF3472 overlap by 4 nucleotides GFF3472 and GFF3473 are separated by 30 nucleotides GFF3473 and GFF3474 are separated by 43 nucleotides
GFF3471 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 352,621 to 353,802
GFF3471
GFF3472 - Enoyl-CoA hydratase (EC 4.2.1.17), at 353,799 to 354,599
GFF3472
GFF3473 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 354,630 to 355,412
GFF3473
GFF3474 - hypothetical protein, at 355,456 to 356,646
GFF3474
Position (kb) 354
355
356 Strain fitness (log2 ratio) -2
-1
0
1 at 353.708 kb on - strand at 354.615 kb on + strand at 354.616 kb on - strand at 354.765 kb on - strand, within GFF3473 at 354.765 kb on - strand, within GFF3473 at 354.789 kb on + strand, within GFF3473 at 354.989 kb on + strand, within GFF3473 at 355.028 kb on + strand, within GFF3473 at 355.125 kb on + strand, within GFF3473 at 355.347 kb on - strand at 355.416 kb on - strand at 355.423 kb on + strand at 355.610 kb on - strand, within GFF3474 at 355.691 kb on + strand, within GFF3474 at 355.691 kb on + strand, within GFF3474 at 355.711 kb on + strand, within GFF3474 at 355.787 kb on + strand, within GFF3474 at 355.787 kb on + strand, within GFF3474 at 355.838 kb on + strand, within GFF3474 at 355.855 kb on - strand, within GFF3474 at 355.855 kb on - strand, within GFF3474 at 356.230 kb on + strand, within GFF3474 at 356.230 kb on + strand, within GFF3474 at 356.389 kb on + strand, within GFF3474
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 353,708 - -1.8 354,615 + +0.0 354,616 - -0.3 354,765 - GFF3473 0.17 -0.6 354,765 - GFF3473 0.17 -0.8 354,789 + GFF3473 0.20 -1.2 354,989 + GFF3473 0.46 -0.2 355,028 + GFF3473 0.51 -0.6 355,125 + GFF3473 0.63 +0.8 355,347 - -0.2 355,416 - +0.8 355,423 + +0.0 355,610 - GFF3474 0.13 -0.2 355,691 + GFF3474 0.20 -0.7 355,691 + GFF3474 0.20 +0.0 355,711 + GFF3474 0.21 +0.0 355,787 + GFF3474 0.28 -0.5 355,787 + GFF3474 0.28 -0.1 355,838 + GFF3474 0.32 -0.2 355,855 - GFF3474 0.34 +0.5 355,855 - GFF3474 0.34 +0.4 356,230 + GFF3474 0.65 +1.1 356,230 + GFF3474 0.65 +1.4 356,389 + GFF3474 0.78 +0.3
Or see this region's nucleotide sequence