Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3411 and GFF3412 are separated by 10 nucleotides GFF3412 and GFF3413 are separated by 18 nucleotides
GFF3411 - Tricarboxylate transport protein TctC, at 296,459 to 297,442
GFF3411
GFF3412 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 297,453 to 298,430
GFF3412
GFF3413 - Rieske (2Fe-2S) protein, at 298,449 to 299,558
GFF3413
Position (kb) 297
298
299 Strain fitness (log2 ratio) -1
0
1 at 296.726 kb on + strand, within GFF3411 at 296.840 kb on + strand, within GFF3411 at 296.840 kb on + strand, within GFF3411 at 296.841 kb on - strand, within GFF3411 at 296.841 kb on - strand, within GFF3411 at 296.841 kb on - strand, within GFF3411 at 296.930 kb on + strand, within GFF3411 at 296.930 kb on + strand, within GFF3411 at 296.930 kb on + strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 297.017 kb on + strand, within GFF3411 at 297.018 kb on - strand, within GFF3411 at 297.338 kb on + strand, within GFF3411 at 297.339 kb on - strand, within GFF3411 at 297.348 kb on - strand at 297.558 kb on + strand, within GFF3412 at 297.559 kb on - strand, within GFF3412 at 297.624 kb on + strand, within GFF3412 at 297.925 kb on - strand, within GFF3412 at 298.042 kb on - strand, within GFF3412 at 298.042 kb on - strand, within GFF3412 at 298.066 kb on + strand, within GFF3412 at 298.341 kb on + strand at 298.342 kb on - strand at 298.557 kb on + strand at 298.558 kb on - strand at 298.632 kb on + strand, within GFF3413 at 298.968 kb on + strand, within GFF3413 at 298.969 kb on - strand, within GFF3413 at 299.217 kb on + strand, within GFF3413 at 299.265 kb on + strand, within GFF3413 at 299.266 kb on - strand, within GFF3413 at 299.266 kb on - strand, within GFF3413 at 299.319 kb on + strand, within GFF3413
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 296,726 + GFF3411 0.27 +0.1 296,840 + GFF3411 0.39 -0.3 296,840 + GFF3411 0.39 -0.5 296,841 - GFF3411 0.39 +0.3 296,841 - GFF3411 0.39 +0.8 296,841 - GFF3411 0.39 +0.3 296,930 + GFF3411 0.48 +0.3 296,930 + GFF3411 0.48 -1.0 296,930 + GFF3411 0.48 +0.7 296,931 - GFF3411 0.48 +0.8 296,931 - GFF3411 0.48 -1.0 296,931 - GFF3411 0.48 -0.1 296,931 - GFF3411 0.48 +0.6 296,931 - GFF3411 0.48 -0.6 296,931 - GFF3411 0.48 +0.2 296,931 - GFF3411 0.48 +0.0 297,017 + GFF3411 0.57 -0.5 297,018 - GFF3411 0.57 -0.4 297,338 + GFF3411 0.89 +0.1 297,339 - GFF3411 0.89 -1.2 297,348 - -0.0 297,558 + GFF3412 0.11 +0.2 297,559 - GFF3412 0.11 -1.2 297,624 + GFF3412 0.17 +1.1 297,925 - GFF3412 0.48 +1.0 298,042 - GFF3412 0.60 +0.4 298,042 - GFF3412 0.60 +0.1 298,066 + GFF3412 0.63 +0.0 298,341 + -0.3 298,342 - +0.1 298,557 + -0.6 298,558 - +0.2 298,632 + GFF3413 0.16 +0.6 298,968 + GFF3413 0.47 +0.5 298,969 - GFF3413 0.47 +0.2 299,217 + GFF3413 0.69 +1.1 299,265 + GFF3413 0.74 +0.1 299,266 - GFF3413 0.74 -0.2 299,266 - GFF3413 0.74 +0.1 299,319 + GFF3413 0.78 +0.5
Or see this region's nucleotide sequence