Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3409 and GFF3410 are separated by 753 nucleotides GFF3410 and GFF3411 are separated by 101 nucleotides
GFF3409 - Transcriptional regulator, AraC family, at 293,682 to 294,716
GFF3409
GFF3410 - Transcriptional regulator, LysR family, at 295,470 to 296,357
GFF3410
GFF3411 - Tricarboxylate transport protein TctC, at 296,459 to 297,442
GFF3411
Position (kb) 295
296
297 Strain fitness (log2 ratio) -1
0
1 at 294.702 kb on + strand at 294.703 kb on - strand at 294.850 kb on - strand at 295.112 kb on + strand at 295.113 kb on - strand at 295.197 kb on - strand at 295.310 kb on + strand at 295.355 kb on + strand at 295.472 kb on - strand at 295.555 kb on + strand at 295.555 kb on + strand at 295.555 kb on + strand at 295.555 kb on + strand at 295.555 kb on + strand at 295.556 kb on - strand at 295.847 kb on - strand, within GFF3410 at 295.847 kb on - strand, within GFF3410 at 295.909 kb on + strand, within GFF3410 at 295.909 kb on + strand, within GFF3410 at 295.910 kb on - strand, within GFF3410 at 296.726 kb on + strand, within GFF3411 at 296.840 kb on + strand, within GFF3411 at 296.840 kb on + strand, within GFF3411 at 296.841 kb on - strand, within GFF3411 at 296.841 kb on - strand, within GFF3411 at 296.841 kb on - strand, within GFF3411 at 296.930 kb on + strand, within GFF3411 at 296.930 kb on + strand, within GFF3411 at 296.930 kb on + strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 296.931 kb on - strand, within GFF3411 at 297.017 kb on + strand, within GFF3411 at 297.018 kb on - strand, within GFF3411 at 297.338 kb on + strand, within GFF3411 at 297.339 kb on - strand, within GFF3411 at 297.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 294,702 + +0.6 294,703 - +0.2 294,850 - -1.0 295,112 + -1.0 295,113 - -0.0 295,197 - -0.1 295,310 + +0.1 295,355 + +0.2 295,472 - -0.5 295,555 + -0.3 295,555 + -0.4 295,555 + +0.5 295,555 + -0.6 295,555 + +0.8 295,556 - -0.1 295,847 - GFF3410 0.42 +1.0 295,847 - GFF3410 0.42 +1.2 295,909 + GFF3410 0.49 +0.2 295,909 + GFF3410 0.49 -1.2 295,910 - GFF3410 0.50 +0.9 296,726 + GFF3411 0.27 +0.1 296,840 + GFF3411 0.39 -0.3 296,840 + GFF3411 0.39 -0.5 296,841 - GFF3411 0.39 +0.3 296,841 - GFF3411 0.39 +0.8 296,841 - GFF3411 0.39 +0.3 296,930 + GFF3411 0.48 +0.3 296,930 + GFF3411 0.48 -1.0 296,930 + GFF3411 0.48 +0.7 296,931 - GFF3411 0.48 +0.8 296,931 - GFF3411 0.48 -1.0 296,931 - GFF3411 0.48 -0.1 296,931 - GFF3411 0.48 +0.6 296,931 - GFF3411 0.48 -0.6 296,931 - GFF3411 0.48 +0.2 296,931 - GFF3411 0.48 +0.0 297,017 + GFF3411 0.57 -0.5 297,018 - GFF3411 0.57 -0.4 297,338 + GFF3411 0.89 +0.1 297,339 - GFF3411 0.89 -1.2 297,348 - -0.0
Or see this region's nucleotide sequence