Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3384 and GFF3385 are separated by 2 nucleotides GFF3385 and GFF3386 overlap by 4 nucleotides
GFF3384 - MoxR-like ATPase in aerotolerance operon, at 268,615 to 269,616
GFF3384
GFF3385 - hypothetical protein PA3071, at 269,619 to 270,689
GFF3385
GFF3386 - BatA (Bacteroides aerotolerance operon), at 270,686 to 271,753
GFF3386
Position (kb) 269
270
271 Strain fitness (log2 ratio) -1
0
1 at 268.666 kb on + strand at 268.667 kb on - strand at 268.667 kb on - strand at 268.879 kb on + strand, within GFF3384 at 268.879 kb on + strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 268.880 kb on - strand, within GFF3384 at 269.096 kb on - strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.269 kb on + strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.270 kb on - strand, within GFF3384 at 269.293 kb on + strand, within GFF3384 at 269.294 kb on - strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.443 kb on + strand, within GFF3384 at 269.444 kb on - strand, within GFF3384 at 269.460 kb on + strand, within GFF3384 at 269.509 kb on + strand, within GFF3384 at 269.510 kb on - strand, within GFF3384 at 269.767 kb on - strand, within GFF3385 at 269.767 kb on - strand, within GFF3385 at 270.765 kb on - strand at 270.765 kb on - strand at 270.765 kb on - strand at 270.765 kb on - strand at 271.266 kb on - strand, within GFF3386 at 271.266 kb on - strand, within GFF3386 at 271.361 kb on + strand, within GFF3386 at 271.361 kb on + strand, within GFF3386 at 271.362 kb on - strand, within GFF3386 at 271.362 kb on - strand, within GFF3386 at 271.362 kb on - strand, within GFF3386 at 271.463 kb on + strand, within GFF3386 at 271.464 kb on - strand, within GFF3386 at 271.580 kb on + strand, within GFF3386 at 271.581 kb on - strand, within GFF3386 at 271.581 kb on - strand, within GFF3386 at 271.583 kb on + strand, within GFF3386 at 271.584 kb on - strand, within GFF3386 at 271.584 kb on - strand, within GFF3386 at 271.584 kb on - strand, within GFF3386 at 271.587 kb on - strand, within GFF3386 at 271.619 kb on + strand, within GFF3386 at 271.619 kb on + strand, within GFF3386
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 268,666 + -0.2 268,667 - +0.8 268,667 - -0.0 268,879 + GFF3384 0.26 -0.2 268,879 + GFF3384 0.26 +0.7 268,880 - GFF3384 0.26 -0.5 268,880 - GFF3384 0.26 +0.8 268,880 - GFF3384 0.26 +0.5 268,880 - GFF3384 0.26 +1.3 269,096 - GFF3384 0.48 +0.8 269,269 + GFF3384 0.65 -0.2 269,269 + GFF3384 0.65 -0.9 269,269 + GFF3384 0.65 -0.4 269,269 + GFF3384 0.65 -0.3 269,270 - GFF3384 0.65 -0.2 269,270 - GFF3384 0.65 -0.5 269,270 - GFF3384 0.65 -0.5 269,270 - GFF3384 0.65 -0.0 269,293 + GFF3384 0.68 +0.5 269,294 - GFF3384 0.68 -0.9 269,443 + GFF3384 0.83 -0.4 269,443 + GFF3384 0.83 -0.1 269,443 + GFF3384 0.83 +0.2 269,443 + GFF3384 0.83 +1.2 269,443 + GFF3384 0.83 -0.8 269,444 - GFF3384 0.83 +1.4 269,460 + GFF3384 0.84 -0.0 269,509 + GFF3384 0.89 +0.1 269,510 - GFF3384 0.89 +0.0 269,767 - GFF3385 0.14 -0.6 269,767 - GFF3385 0.14 -0.7 270,765 - -0.1 270,765 - -0.8 270,765 - +0.5 270,765 - +0.0 271,266 - GFF3386 0.54 -1.5 271,266 - GFF3386 0.54 +0.1 271,361 + GFF3386 0.63 +0.6 271,361 + GFF3386 0.63 +0.1 271,362 - GFF3386 0.63 -0.4 271,362 - GFF3386 0.63 -0.2 271,362 - GFF3386 0.63 +0.2 271,463 + GFF3386 0.73 -0.0 271,464 - GFF3386 0.73 -0.1 271,580 + GFF3386 0.84 -0.3 271,581 - GFF3386 0.84 +0.4 271,581 - GFF3386 0.84 -1.5 271,583 + GFF3386 0.84 -0.9 271,584 - GFF3386 0.84 +0.0 271,584 - GFF3386 0.84 -0.2 271,584 - GFF3386 0.84 -0.2 271,587 - GFF3386 0.84 +0.1 271,619 + GFF3386 0.87 -0.3 271,619 + GFF3386 0.87 -1.2
Or see this region's nucleotide sequence