Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3361

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3360 and GFF3361 are separated by 30 nucleotidesGFF3361 and GFF3362 are separated by 15 nucleotidesGFF3362 and GFF3363 are separated by 40 nucleotides GFF3360 - 3-isopropylmalate dehydrogenase (EC 1.1.1.85), at 245,802 to 246,890 GFF3360 GFF3361 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 246,921 to 247,571 GFF3361 GFF3362 - hypothetical protein, at 247,587 to 247,748 GFF3362 GFF3363 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 247,789 to 249,210 GFF3363 Position (kb) 246 247 248Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.000 kb on + strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.001 kb on - strand, within GFF3360at 246.005 kb on + strand, within GFF3360at 246.005 kb on + strand, within GFF3360at 246.006 kb on - strand, within GFF3360at 246.067 kb on + strand, within GFF3360at 246.067 kb on + strand, within GFF3360at 246.068 kb on - strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.232 kb on + strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.233 kb on - strand, within GFF3360at 246.406 kb on + strand, within GFF3360at 246.407 kb on - strand, within GFF3360at 246.407 kb on - strand, within GFF3360at 246.407 kb on - strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.487 kb on + strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.488 kb on - strand, within GFF3360at 246.577 kb on + strand, within GFF3360at 246.673 kb on + strand, within GFF3360at 246.673 kb on + strand, within GFF3360at 246.674 kb on - strand, within GFF3360at 246.674 kb on - strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.766 kb on + strand, within GFF3360at 246.997 kb on + strand, within GFF3361at 246.997 kb on + strand, within GFF3361at 247.042 kb on + strand, within GFF3361at 247.042 kb on + strand, within GFF3361at 247.042 kb on + strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.043 kb on - strand, within GFF3361at 247.237 kb on + strand, within GFF3361at 247.237 kb on + strand, within GFF3361at 247.237 kb on + strand, within GFF3361at 247.268 kb on - strand, within GFF3361at 247.351 kb on + strand, within GFF3361at 247.430 kb on - strand, within GFF3361at 247.588 kb on + strandat 247.588 kb on + strandat 247.588 kb on + strandat 247.588 kb on + strandat 247.589 kb on - strandat 247.589 kb on - strandat 247.589 kb on - strandat 248.225 kb on + strand, within GFF3363at 248.225 kb on + strand, within GFF3363at 248.225 kb on + strand, within GFF3363at 248.225 kb on + strand, within GFF3363at 248.225 kb on + strand, within GFF3363at 248.225 kb on + strand, within GFF3363at 248.225 kb on + strand, within GFF3363at 248.225 kb on + strand, within GFF3363at 248.226 kb on - strand, within GFF3363at 248.226 kb on - strand, within GFF3363at 248.226 kb on - strand, within GFF3363at 248.226 kb on - strand, within GFF3363at 248.226 kb on - strand, within GFF3363at 248.226 kb on - strand, within GFF3363at 248.417 kb on + strand, within GFF3363at 248.474 kb on + strand, within GFF3363at 248.475 kb on - strand, within GFF3363

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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246,000 + GFF3360 0.18 -0.2
246,000 + GFF3360 0.18 -2.8
246,000 + GFF3360 0.18 -2.6
246,000 + GFF3360 0.18 -5.0
246,000 + GFF3360 0.18 -7.2
246,000 + GFF3360 0.18 -5.0
246,000 + GFF3360 0.18 -2.8
246,000 + GFF3360 0.18 -3.7
246,000 + GFF3360 0.18 -6.8
246,000 + GFF3360 0.18 -3.1
246,000 + GFF3360 0.18 -4.0
246,000 + GFF3360 0.18 -6.6
246,000 + GFF3360 0.18 -4.2
246,000 + GFF3360 0.18 -6.5
246,001 - GFF3360 0.18 -6.0
246,001 - GFF3360 0.18 -4.7
246,001 - GFF3360 0.18 -2.0
246,001 - GFF3360 0.18 -6.3
246,001 - GFF3360 0.18 -4.0
246,001 - GFF3360 0.18 -4.8
246,001 - GFF3360 0.18 -1.5
246,001 - GFF3360 0.18 -2.4
246,001 - GFF3360 0.18 -0.8
246,001 - GFF3360 0.18 -4.5
246,001 - GFF3360 0.18 -1.8
246,001 - GFF3360 0.18 -2.8
246,005 + GFF3360 0.19 -3.1
246,005 + GFF3360 0.19 -5.8
246,006 - GFF3360 0.19 -3.4
246,067 + GFF3360 0.24 -4.2
246,067 + GFF3360 0.24 -6.0
246,068 - GFF3360 0.24 -2.0
246,232 + GFF3360 0.39 -2.6
246,232 + GFF3360 0.39 -2.2
246,232 + GFF3360 0.39 -0.8
246,232 + GFF3360 0.39 -1.8
246,232 + GFF3360 0.39 -3.4
246,232 + GFF3360 0.39 -1.2
246,232 + GFF3360 0.39 -1.2
246,232 + GFF3360 0.39 -5.5
246,232 + GFF3360 0.39 -2.5
246,232 + GFF3360 0.39 -3.4
246,232 + GFF3360 0.39 -2.8
246,232 + GFF3360 0.39 -5.4
246,232 + GFF3360 0.39 -4.0
246,232 + GFF3360 0.39 -3.2
246,232 + GFF3360 0.39 -2.0
246,232 + GFF3360 0.39 -5.2
246,232 + GFF3360 0.39 -3.2
246,233 - GFF3360 0.40 -2.5
246,233 - GFF3360 0.40 -3.1
246,233 - GFF3360 0.40 -3.9
246,233 - GFF3360 0.40 -5.2
246,233 - GFF3360 0.40 -0.2
246,233 - GFF3360 0.40 -1.5
246,233 - GFF3360 0.40 -1.8
246,233 - GFF3360 0.40 -2.4
246,233 - GFF3360 0.40 -3.5
246,233 - GFF3360 0.40 -3.7
246,233 - GFF3360 0.40 -4.0
246,233 - GFF3360 0.40 -7.5
246,406 + GFF3360 0.55 -3.7
246,407 - GFF3360 0.56 -5.1
246,407 - GFF3360 0.56 -4.1
246,407 - GFF3360 0.56 -2.0
246,487 + GFF3360 0.63 -2.6
246,487 + GFF3360 0.63 -1.8
246,487 + GFF3360 0.63 -2.0
246,487 + GFF3360 0.63 -3.9
246,487 + GFF3360 0.63 -2.6
246,488 - GFF3360 0.63 -0.8
246,488 - GFF3360 0.63 -6.2
246,488 - GFF3360 0.63 -2.9
246,488 - GFF3360 0.63 -6.3
246,488 - GFF3360 0.63 -2.2
246,488 - GFF3360 0.63 -5.8
246,488 - GFF3360 0.63 -2.2
246,488 - GFF3360 0.63 -3.0
246,488 - GFF3360 0.63 -4.9
246,488 - GFF3360 0.63 -2.0
246,488 - GFF3360 0.63 -2.9
246,577 + GFF3360 0.71 -5.9
246,673 + GFF3360 0.80 -3.6
246,673 + GFF3360 0.80 -7.4
246,674 - GFF3360 0.80 -3.5
246,674 - GFF3360 0.80 -2.6
246,766 + GFF3360 0.89 -1.2
246,766 + GFF3360 0.89 -1.5
246,766 + GFF3360 0.89 -2.9
246,766 + GFF3360 0.89 -0.8
246,997 + GFF3361 0.12 -5.0
246,997 + GFF3361 0.12 -4.9
247,042 + GFF3361 0.19 -4.3
247,042 + GFF3361 0.19 -5.1
247,042 + GFF3361 0.19 -4.2
247,043 - GFF3361 0.19 -2.6
247,043 - GFF3361 0.19 -2.9
247,043 - GFF3361 0.19 -2.9
247,043 - GFF3361 0.19 -3.2
247,237 + GFF3361 0.49 -5.1
247,237 + GFF3361 0.49 -3.8
247,237 + GFF3361 0.49 -3.4
247,268 - GFF3361 0.53 -3.1
247,351 + GFF3361 0.66 -5.7
247,430 - GFF3361 0.78 -4.4
247,588 + +0.0
247,588 + -0.2
247,588 + -0.6
247,588 + -0.7
247,589 - -0.1
247,589 - -0.2
247,589 - +0.5
248,225 + GFF3363 0.31 -3.2
248,225 + GFF3363 0.31 -4.5
248,225 + GFF3363 0.31 -2.9
248,225 + GFF3363 0.31 -5.1
248,225 + GFF3363 0.31 -4.8
248,225 + GFF3363 0.31 -5.0
248,225 + GFF3363 0.31 -2.2
248,225 + GFF3363 0.31 -3.2
248,226 - GFF3363 0.31 -0.8
248,226 - GFF3363 0.31 -0.8
248,226 - GFF3363 0.31 -2.5
248,226 - GFF3363 0.31 -4.6
248,226 - GFF3363 0.31 -5.8
248,226 - GFF3363 0.31 -4.2
248,417 + GFF3363 0.44 -5.2
248,474 + GFF3363 0.48 -3.2
248,475 - GFF3363 0.48 -1.7

Or see this region's nucleotide sequence