Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3044 and GFF3045 are separated by 63 nucleotides GFF3045 and GFF3046 are separated by 14 nucleotides GFF3046 and GFF3047 are separated by 16 nucleotides
GFF3044 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 124,637 to 125,851
GFF3044
GFF3045 - Transcriptional regulator, LysR family, at 125,915 to 126,841
GFF3045
GFF3046 - NADPH:quinone oxidoreductase, at 126,856 to 127,422
GFF3046
GFF3047 - Bll3153 protein, at 127,439 to 127,891
GFF3047
Position (kb) 125
126
127 Strain fitness (log2 ratio) -2
-1
0
1 at 125.009 kb on + strand, within GFF3044 at 125.009 kb on + strand, within GFF3044 at 125.009 kb on + strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.010 kb on - strand, within GFF3044 at 125.042 kb on + strand, within GFF3044 at 125.096 kb on + strand, within GFF3044 at 125.096 kb on + strand, within GFF3044 at 125.097 kb on - strand, within GFF3044 at 125.097 kb on - strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.345 kb on + strand, within GFF3044 at 125.346 kb on - strand, within GFF3044 at 125.346 kb on - strand, within GFF3044 at 125.799 kb on - strand at 125.799 kb on - strand at 125.799 kb on - strand at 125.871 kb on + strand at 126.560 kb on + strand, within GFF3045 at 126.812 kb on + strand at 126.812 kb on + strand at 126.812 kb on + strand at 126.813 kb on - strand at 127.093 kb on + strand, within GFF3046 at 127.503 kb on + strand, within GFF3047 at 127.639 kb on - strand, within GFF3047 at 127.671 kb on + strand, within GFF3047 at 127.672 kb on - strand, within GFF3047 at 127.827 kb on + strand, within GFF3047 at 127.827 kb on + strand, within GFF3047 at 127.827 kb on + strand, within GFF3047 at 127.828 kb on - strand, within GFF3047
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 125,009 + GFF3044 0.31 -0.1 125,009 + GFF3044 0.31 -0.9 125,009 + GFF3044 0.31 -0.3 125,010 - GFF3044 0.31 +0.5 125,010 - GFF3044 0.31 +1.1 125,010 - GFF3044 0.31 -0.1 125,010 - GFF3044 0.31 -0.3 125,042 + GFF3044 0.33 -0.5 125,096 + GFF3044 0.38 +0.9 125,096 + GFF3044 0.38 +0.5 125,097 - GFF3044 0.38 +0.6 125,097 - GFF3044 0.38 -0.1 125,345 + GFF3044 0.58 +0.7 125,345 + GFF3044 0.58 -0.1 125,345 + GFF3044 0.58 +0.4 125,345 + GFF3044 0.58 -0.2 125,345 + GFF3044 0.58 -0.2 125,345 + GFF3044 0.58 -1.1 125,346 - GFF3044 0.58 +0.1 125,346 - GFF3044 0.58 +0.3 125,799 - +0.5 125,799 - +1.2 125,799 - -0.3 125,871 + +0.2 126,560 + GFF3045 0.70 -0.6 126,812 + +0.1 126,812 + -0.4 126,812 + -0.3 126,813 - -0.8 127,093 + GFF3046 0.42 +0.4 127,503 + GFF3047 0.14 -0.1 127,639 - GFF3047 0.44 +0.0 127,671 + GFF3047 0.51 +0.1 127,672 - GFF3047 0.51 +0.5 127,827 + GFF3047 0.86 -0.1 127,827 + GFF3047 0.86 -2.5 127,827 + GFF3047 0.86 -0.0 127,828 - GFF3047 0.86 -0.4
Or see this region's nucleotide sequence