Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3041 and GFF3042 are separated by 89 nucleotides GFF3042 and GFF3043 are separated by 52 nucleotides GFF3043 and GFF3044 are separated by 17 nucleotides
GFF3041 - Outer membrane protein (porin), at 121,656 to 122,759
GFF3041
GFF3042 - Transcriptional regulator, IclR family, at 122,849 to 123,643
GFF3042
GFF3043 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 123,696 to 124,619
GFF3043
GFF3044 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 124,637 to 125,851
GFF3044
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1 at 121.976 kb on - strand, within GFF3041 at 122.070 kb on + strand, within GFF3041 at 122.070 kb on + strand, within GFF3041 at 122.070 kb on + strand, within GFF3041 at 122.071 kb on - strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.214 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.256 kb on + strand, within GFF3041 at 122.257 kb on - strand, within GFF3041 at 122.257 kb on - strand, within GFF3041 at 122.257 kb on - strand, within GFF3041 at 122.257 kb on - strand, within GFF3041 at 122.322 kb on + strand, within GFF3041 at 122.322 kb on + strand, within GFF3041 at 122.322 kb on + strand, within GFF3041 at 122.322 kb on + strand, within GFF3041 at 122.323 kb on - strand, within GFF3041 at 122.323 kb on - strand, within GFF3041 at 122.422 kb on - strand, within GFF3041 at 122.422 kb on - strand, within GFF3041 at 122.422 kb on - strand, within GFF3041 at 122.502 kb on + strand, within GFF3041 at 122.503 kb on - strand, within GFF3041 at 122.585 kb on + strand, within GFF3041 at 122.592 kb on - strand, within GFF3041 at 122.661 kb on + strand at 122.661 kb on + strand at 122.662 kb on - strand at 122.662 kb on - strand at 122.662 kb on - strand at 122.711 kb on + strand at 122.712 kb on - strand at 122.712 kb on - strand at 123.198 kb on + strand, within GFF3042 at 123.246 kb on + strand, within GFF3042 at 123.247 kb on - strand, within GFF3042 at 123.327 kb on + strand, within GFF3042 at 123.327 kb on + strand, within GFF3042 at 123.327 kb on + strand, within GFF3042 at 123.327 kb on + strand, within GFF3042 at 123.328 kb on - strand, within GFF3042 at 123.328 kb on - strand, within GFF3042 at 123.328 kb on - strand, within GFF3042 at 123.367 kb on - strand, within GFF3042 at 123.645 kb on - strand at 123.685 kb on + strand at 123.686 kb on - strand at 123.686 kb on - strand at 123.686 kb on - strand at 123.688 kb on - strand at 123.688 kb on - strand at 124.146 kb on - strand, within GFF3043 at 124.368 kb on + strand, within GFF3043 at 124.368 kb on + strand, within GFF3043 at 124.369 kb on - strand, within GFF3043 at 124.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 121,976 - GFF3041 0.29 +0.6 122,070 + GFF3041 0.38 +0.1 122,070 + GFF3041 0.38 -0.2 122,070 + GFF3041 0.38 +0.3 122,071 - GFF3041 0.38 +0.6 122,214 + GFF3041 0.51 -0.4 122,214 + GFF3041 0.51 -0.9 122,214 + GFF3041 0.51 +0.2 122,214 + GFF3041 0.51 +0.4 122,214 + GFF3041 0.51 -0.3 122,214 + GFF3041 0.51 +0.1 122,256 + GFF3041 0.54 -0.3 122,256 + GFF3041 0.54 +0.5 122,256 + GFF3041 0.54 -0.1 122,256 + GFF3041 0.54 -0.1 122,256 + GFF3041 0.54 -0.2 122,256 + GFF3041 0.54 -0.6 122,256 + GFF3041 0.54 -0.3 122,257 - GFF3041 0.54 -0.1 122,257 - GFF3041 0.54 -0.4 122,257 - GFF3041 0.54 +0.9 122,257 - GFF3041 0.54 +0.1 122,322 + GFF3041 0.60 -0.2 122,322 + GFF3041 0.60 +0.5 122,322 + GFF3041 0.60 -0.5 122,322 + GFF3041 0.60 -2.4 122,323 - GFF3041 0.60 -0.5 122,323 - GFF3041 0.60 +0.8 122,422 - GFF3041 0.69 -0.1 122,422 - GFF3041 0.69 -0.1 122,422 - GFF3041 0.69 -0.2 122,502 + GFF3041 0.77 -0.1 122,503 - GFF3041 0.77 +0.5 122,585 + GFF3041 0.84 -0.6 122,592 - GFF3041 0.85 +0.9 122,661 + -0.2 122,661 + -0.5 122,662 - -0.6 122,662 - -0.1 122,662 - +1.1 122,711 + -0.5 122,712 - +0.1 122,712 - -1.9 123,198 + GFF3042 0.44 -0.4 123,246 + GFF3042 0.50 +0.5 123,247 - GFF3042 0.50 +0.6 123,327 + GFF3042 0.60 +0.5 123,327 + GFF3042 0.60 -0.4 123,327 + GFF3042 0.60 -0.1 123,327 + GFF3042 0.60 -0.1 123,328 - GFF3042 0.60 +0.5 123,328 - GFF3042 0.60 -0.2 123,328 - GFF3042 0.60 +0.2 123,367 - GFF3042 0.65 +0.1 123,645 - -0.3 123,685 + +1.7 123,686 - +0.0 123,686 - -0.3 123,686 - -0.1 123,688 - +0.9 123,688 - +0.5 124,146 - GFF3043 0.49 +0.5 124,368 + GFF3043 0.73 -0.1 124,368 + GFF3043 0.73 +0.5 124,369 - GFF3043 0.73 -0.3 124,569 + +0.1
Or see this region's nucleotide sequence