Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3020 and GFF3021 are separated by 4 nucleotides GFF3021 and GFF3022 are separated by 4 nucleotides GFF3022 and GFF3023 are separated by 1 nucleotides
GFF3020 - hypothetical protein, at 97,984 to 98,100
GFF3020
GFF3021 - Alkanesulfonates transport system permease protein, at 98,105 to 98,932
GFF3021
GFF3022 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 98,937 to 99,749
GFF3022
GFF3023 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 99,751 to 100,776
GFF3023
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 97.980 kb on + strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.980 kb on + strand at 97.981 kb on - strand at 97.989 kb on + strand at 97.989 kb on + strand at 97.989 kb on + strand at 97.990 kb on - strand at 98.266 kb on - strand, within GFF3021 at 98.266 kb on - strand, within GFF3021 at 98.266 kb on - strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.292 kb on + strand, within GFF3021 at 98.293 kb on - strand, within GFF3021 at 98.293 kb on - strand, within GFF3021 at 98.339 kb on + strand, within GFF3021 at 98.339 kb on + strand, within GFF3021 at 98.340 kb on - strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.376 kb on + strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.377 kb on - strand, within GFF3021 at 98.463 kb on + strand, within GFF3021 at 98.464 kb on + strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.464 kb on - strand, within GFF3021 at 98.595 kb on + strand, within GFF3021 at 98.595 kb on + strand, within GFF3021 at 98.718 kb on + strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.719 kb on - strand, within GFF3021 at 98.963 kb on - strand at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.496 kb on + strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.497 kb on - strand, within GFF3022 at 99.676 kb on + strand at 99.676 kb on + strand at 99.801 kb on - strand at 99.801 kb on - strand at 99.941 kb on + strand, within GFF3023 at 99.942 kb on - strand, within GFF3023 at 99.965 kb on + strand, within GFF3023 at 99.965 kb on + strand, within GFF3023 at 100.619 kb on + strand, within GFF3023 at 100.620 kb on - strand, within GFF3023 at 100.653 kb on - strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.655 kb on + strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023 at 100.656 kb on - strand, within GFF3023
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 97,980 + +0.5 97,980 + +0.6 97,980 + +2.5 97,980 + +0.1 97,981 - +0.8 97,989 + +0.1 97,989 + +0.1 97,989 + -1.9 97,990 - +0.8 98,266 - GFF3021 0.19 +0.1 98,266 - GFF3021 0.19 +0.1 98,266 - GFF3021 0.19 +0.4 98,292 + GFF3021 0.23 +0.3 98,292 + GFF3021 0.23 +0.5 98,292 + GFF3021 0.23 +0.5 98,293 - GFF3021 0.23 +0.7 98,293 - GFF3021 0.23 +0.6 98,339 + GFF3021 0.28 +0.5 98,339 + GFF3021 0.28 -0.1 98,340 - GFF3021 0.28 -0.8 98,376 + GFF3021 0.33 +1.1 98,376 + GFF3021 0.33 +0.1 98,376 + GFF3021 0.33 +0.8 98,376 + GFF3021 0.33 +0.9 98,376 + GFF3021 0.33 +0.2 98,377 - GFF3021 0.33 +0.9 98,377 - GFF3021 0.33 -1.4 98,377 - GFF3021 0.33 +0.1 98,463 + GFF3021 0.43 +3.8 98,464 + GFF3021 0.43 +0.9 98,464 - GFF3021 0.43 +0.3 98,464 - GFF3021 0.43 +0.8 98,464 - GFF3021 0.43 +0.6 98,464 - GFF3021 0.43 +0.4 98,464 - GFF3021 0.43 -1.4 98,595 + GFF3021 0.59 +0.3 98,595 + GFF3021 0.59 +0.2 98,718 + GFF3021 0.74 +0.9 98,719 - GFF3021 0.74 +0.9 98,719 - GFF3021 0.74 -0.1 98,719 - GFF3021 0.74 -0.6 98,719 - GFF3021 0.74 -0.3 98,719 - GFF3021 0.74 +0.6 98,719 - GFF3021 0.74 +0.2 98,963 - -0.1 99,496 + GFF3022 0.69 +0.8 99,496 + GFF3022 0.69 +0.4 99,496 + GFF3022 0.69 +1.1 99,496 + GFF3022 0.69 +0.5 99,497 - GFF3022 0.69 +0.1 99,497 - GFF3022 0.69 +1.0 99,497 - GFF3022 0.69 +0.8 99,497 - GFF3022 0.69 -0.1 99,497 - GFF3022 0.69 +0.1 99,676 + -0.6 99,676 + +1.7 99,801 - -0.9 99,801 - -0.1 99,941 + GFF3023 0.19 -1.2 99,942 - GFF3023 0.19 +0.4 99,965 + GFF3023 0.21 +0.9 99,965 + GFF3023 0.21 -0.5 100,619 + GFF3023 0.85 -1.1 100,620 - GFF3023 0.85 -0.1 100,653 - GFF3023 0.88 +0.4 100,655 + GFF3023 0.88 -0.3 100,655 + GFF3023 0.88 -1.9 100,655 + GFF3023 0.88 -0.5 100,655 + GFF3023 0.88 -0.8 100,655 + GFF3023 0.88 +0.3 100,655 + GFF3023 0.88 -0.1 100,655 + GFF3023 0.88 +0.0 100,656 - GFF3023 0.88 +0.2 100,656 - GFF3023 0.88 +1.3 100,656 - GFF3023 0.88 +0.3 100,656 - GFF3023 0.88 -0.2 100,656 - GFF3023 0.88 +0.3
Or see this region's nucleotide sequence