Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3006 and GFF3007 are separated by 1 nucleotides GFF3007 and GFF3008 are separated by 17 nucleotides GFF3008 and GFF3009 are separated by 62 nucleotides
GFF3006 - FIG00715393: hypothetical protein, at 84,526 to 85,164
GFF3006
GFF3007 - Polysaccharide deacetylase, at 85,166 to 85,972
GFF3007
GFF3008 - FIG025233: SAM-dependent methyltransferases, at 85,990 to 86,691
GFF3008
GFF3009 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 86,754 to 87,950
GFF3009
Position (kb) 85
86
87 Strain fitness (log2 ratio) -1
0
1 at 85.565 kb on + strand, within GFF3007 at 85.763 kb on + strand, within GFF3007 at 86.042 kb on - strand at 86.048 kb on - strand at 86.125 kb on + strand, within GFF3008 at 86.126 kb on - strand, within GFF3008 at 86.126 kb on - strand, within GFF3008 at 86.392 kb on + strand, within GFF3008 at 86.392 kb on + strand, within GFF3008 at 86.393 kb on - strand, within GFF3008 at 86.393 kb on - strand, within GFF3008 at 86.501 kb on - strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.536 kb on + strand, within GFF3008 at 86.566 kb on + strand, within GFF3008 at 86.566 kb on + strand, within GFF3008 at 86.566 kb on + strand, within GFF3008 at 86.567 kb on - strand, within GFF3008 at 86.947 kb on - strand, within GFF3009 at 87.100 kb on - strand, within GFF3009 at 87.147 kb on + strand, within GFF3009 at 87.147 kb on + strand, within GFF3009 at 87.148 kb on - strand, within GFF3009 at 87.148 kb on - strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.345 kb on + strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.346 kb on - strand, within GFF3009 at 87.393 kb on + strand, within GFF3009 at 87.394 kb on - strand, within GFF3009 at 87.394 kb on - strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.615 kb on + strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 87.616 kb on - strand, within GFF3009 at 87.616 kb on - strand, within GFF3009
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 85,565 + GFF3007 0.49 +1.2 85,763 + GFF3007 0.74 +0.1 86,042 - -0.2 86,048 - -0.1 86,125 + GFF3008 0.19 -0.2 86,126 - GFF3008 0.19 +0.5 86,126 - GFF3008 0.19 +0.7 86,392 + GFF3008 0.57 +0.5 86,392 + GFF3008 0.57 +0.9 86,393 - GFF3008 0.57 +0.9 86,393 - GFF3008 0.57 +0.3 86,501 - GFF3008 0.73 +1.0 86,536 + GFF3008 0.78 +0.4 86,536 + GFF3008 0.78 -0.1 86,536 + GFF3008 0.78 +0.5 86,536 + GFF3008 0.78 +0.6 86,536 + GFF3008 0.78 -0.4 86,566 + GFF3008 0.82 +0.0 86,566 + GFF3008 0.82 +0.1 86,566 + GFF3008 0.82 +0.3 86,567 - GFF3008 0.82 -0.1 86,947 - GFF3009 0.16 +0.2 87,100 - GFF3009 0.29 +0.1 87,147 + GFF3009 0.33 -0.6 87,147 + GFF3009 0.33 +0.4 87,148 - GFF3009 0.33 -0.3 87,148 - GFF3009 0.33 -0.4 87,345 + GFF3009 0.49 -0.3 87,345 + GFF3009 0.49 +0.9 87,345 + GFF3009 0.49 +0.6 87,346 - GFF3009 0.49 +0.8 87,346 - GFF3009 0.49 +0.5 87,346 - GFF3009 0.49 -0.1 87,346 - GFF3009 0.49 +0.1 87,393 + GFF3009 0.53 +0.5 87,394 - GFF3009 0.53 -0.2 87,394 - GFF3009 0.53 +0.1 87,615 + GFF3009 0.72 -0.0 87,615 + GFF3009 0.72 +0.1 87,615 + GFF3009 0.72 +0.5 87,615 + GFF3009 0.72 +0.5 87,615 + GFF3009 0.72 +0.9 87,615 + GFF3009 0.72 -0.4 87,616 - GFF3009 0.72 +0.8 87,616 - GFF3009 0.72 -0.1 87,616 - GFF3009 0.72 +0.4
Or see this region's nucleotide sequence