Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2802 and GFF2803 are separated by 55 nucleotides GFF2803 and GFF2804 are separated by 34 nucleotides GFF2804 and GFF2805 overlap by 4 nucleotides
GFF2802 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 400,169 to 402,265
GFF2802
GFF2803 - Hydrogen peroxide-inducible genes activator, at 402,321 to 403,280
GFF2803
GFF2804 - Non-specific DNA-binding protein Dps / Iron-binding ferritin-like antioxidant protein / Ferroxidase (EC 1.16.3.1), at 403,315 to 403,821
GFF2804
GFF2805 - 4-hydroxybenzoate polyprenyltransferase (EC 2.5.1.39), at 403,818 to 404,672
GFF2805
Position (kb) 402
403
404 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 401.489 kb on + strand, within GFF2802 at 401.489 kb on + strand, within GFF2802 at 401.489 kb on + strand, within GFF2802 at 401.489 kb on + strand, within GFF2802 at 401.490 kb on - strand, within GFF2802 at 401.556 kb on - strand, within GFF2802 at 401.630 kb on + strand, within GFF2802 at 401.631 kb on - strand, within GFF2802 at 401.963 kb on + strand, within GFF2802 at 401.963 kb on + strand, within GFF2802 at 402.252 kb on - strand at 402.312 kb on + strand at 402.312 kb on + strand at 402.312 kb on + strand at 402.342 kb on + strand at 402.342 kb on + strand at 402.342 kb on + strand at 402.343 kb on - strand at 402.343 kb on - strand at 402.343 kb on - strand at 402.615 kb on + strand, within GFF2803 at 402.615 kb on + strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.616 kb on - strand, within GFF2803 at 402.630 kb on + strand, within GFF2803 at 402.630 kb on + strand, within GFF2803 at 402.630 kb on + strand, within GFF2803 at 402.802 kb on - strand, within GFF2803 at 403.131 kb on + strand, within GFF2803 at 403.131 kb on + strand, within GFF2803 at 403.132 kb on - strand, within GFF2803 at 403.132 kb on - strand, within GFF2803 at 403.210 kb on - strand at 403.242 kb on + strand at 403.242 kb on + strand at 403.242 kb on + strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.243 kb on - strand at 403.278 kb on + strand at 403.278 kb on + strand at 403.279 kb on - strand at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.423 kb on + strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.424 kb on - strand, within GFF2804 at 403.432 kb on + strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.433 kb on - strand, within GFF2804 at 403.511 kb on - strand, within GFF2804 at 403.511 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804 at 403.586 kb on - strand, within GFF2804
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 401,489 + GFF2802 0.63 -0.4 401,489 + GFF2802 0.63 -1.5 401,489 + GFF2802 0.63 +0.2 401,489 + GFF2802 0.63 -0.1 401,490 - GFF2802 0.63 -0.1 401,556 - GFF2802 0.66 -0.3 401,630 + GFF2802 0.70 -0.3 401,631 - GFF2802 0.70 -0.1 401,963 + GFF2802 0.86 -2.3 401,963 + GFF2802 0.86 -2.9 402,252 - -0.2 402,312 + -2.1 402,312 + -0.1 402,312 + -0.5 402,342 + -1.2 402,342 + -2.6 402,342 + -0.1 402,343 - -4.2 402,343 - -1.4 402,343 - -2.6 402,615 + GFF2803 0.31 -2.0 402,615 + GFF2803 0.31 -1.6 402,616 - GFF2803 0.31 -2.0 402,616 - GFF2803 0.31 -1.5 402,616 - GFF2803 0.31 -0.4 402,616 - GFF2803 0.31 -0.8 402,630 + GFF2803 0.32 -2.7 402,630 + GFF2803 0.32 -0.7 402,630 + GFF2803 0.32 -1.2 402,802 - GFF2803 0.50 -1.8 403,131 + GFF2803 0.84 -0.5 403,131 + GFF2803 0.84 +0.3 403,132 - GFF2803 0.84 -0.9 403,132 - GFF2803 0.84 +0.6 403,210 - +0.5 403,242 + +0.6 403,242 + -0.1 403,242 + -0.7 403,243 - +0.5 403,243 - -0.8 403,243 - -0.7 403,243 - -1.2 403,243 - -1.1 403,278 + -0.0 403,278 + +0.2 403,279 - -1.7 403,423 + GFF2804 0.21 -1.6 403,423 + GFF2804 0.21 -0.5 403,423 + GFF2804 0.21 -1.7 403,423 + GFF2804 0.21 -0.6 403,423 + GFF2804 0.21 -2.2 403,423 + GFF2804 0.21 -1.4 403,423 + GFF2804 0.21 -1.4 403,424 - GFF2804 0.21 -1.9 403,424 - GFF2804 0.21 -0.7 403,424 - GFF2804 0.21 -1.3 403,424 - GFF2804 0.21 +0.9 403,424 - GFF2804 0.21 -1.4 403,424 - GFF2804 0.21 -1.7 403,424 - GFF2804 0.21 -1.2 403,424 - GFF2804 0.21 -0.7 403,432 + GFF2804 0.23 -1.8 403,433 - GFF2804 0.23 -0.2 403,433 - GFF2804 0.23 -1.0 403,433 - GFF2804 0.23 -2.4 403,511 - GFF2804 0.39 -0.4 403,511 - GFF2804 0.39 -2.5 403,586 - GFF2804 0.53 -3.2 403,586 - GFF2804 0.53 -2.1 403,586 - GFF2804 0.53 -3.2
Or see this region's nucleotide sequence