Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2759 and GFF2760 overlap by 4 nucleotides GFF2760 and GFF2761 are separated by 45 nucleotides GFF2761 and GFF2762 are separated by 10 nucleotides
GFF2759 - Glutathione S-transferase (EC 2.5.1.18), at 357,900 to 358,517
GFF2759
GFF2760 - Glutathione S-transferase (EC 2.5.1.18), at 358,514 to 359,263
GFF2760
GFF2761 - protein of unknown function DUF1501, at 359,309 to 360,769
GFF2761
GFF2762 - FIG00347566: hypothetical protein, at 360,780 to 362,651
GFF2762
Position (kb) 359
360
361 Strain fitness (log2 ratio) -2
-1
0
1
2 at 358.387 kb on + strand, within GFF2759 at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.507 kb on + strand at 358.508 kb on - strand at 358.508 kb on - strand at 358.774 kb on - strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.788 kb on + strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 358.789 kb on - strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.013 kb on + strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.014 kb on - strand, within GFF2760 at 359.106 kb on + strand, within GFF2760 at 359.157 kb on + strand, within GFF2760 at 359.220 kb on + strand at 359.220 kb on + strand at 359.221 kb on - strand at 359.221 kb on - strand at 359.221 kb on - strand at 359.245 kb on + strand at 359.266 kb on + strand at 359.318 kb on - strand at 359.318 kb on - strand at 359.318 kb on - strand at 359.338 kb on - strand at 359.338 kb on - strand at 359.427 kb on + strand at 359.428 kb on - strand at 359.532 kb on + strand, within GFF2761 at 359.533 kb on - strand, within GFF2761 at 359.533 kb on - strand, within GFF2761 at 359.533 kb on - strand, within GFF2761 at 359.688 kb on + strand, within GFF2761 at 359.967 kb on + strand, within GFF2761 at 359.967 kb on + strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 359.968 kb on - strand, within GFF2761 at 360.042 kb on + strand, within GFF2761 at 360.042 kb on + strand, within GFF2761 at 360.042 kb on + strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.043 kb on - strand, within GFF2761 at 360.096 kb on + strand, within GFF2761 at 360.292 kb on - strand, within GFF2761 at 360.315 kb on + strand, within GFF2761 at 360.315 kb on + strand, within GFF2761 at 360.315 kb on + strand, within GFF2761 at 360.315 kb on + strand, within GFF2761 at 360.316 kb on - strand, within GFF2761 at 360.316 kb on - strand, within GFF2761 at 360.316 kb on - strand, within GFF2761 at 360.316 kb on - strand, within GFF2761 at 360.541 kb on - strand, within GFF2761 at 360.549 kb on + strand, within GFF2761 at 360.565 kb on - strand, within GFF2761 at 360.585 kb on + strand, within GFF2761 at 360.628 kb on - strand at 360.781 kb on + strand at 360.781 kb on + strand at 360.782 kb on - strand at 360.782 kb on - strand at 360.782 kb on - strand at 360.782 kb on - strand at 360.782 kb on - strand at 360.782 kb on - strand at 360.796 kb on + strand at 360.797 kb on - strand at 360.797 kb on - strand at 361.003 kb on + strand, within GFF2762 at 361.003 kb on + strand, within GFF2762 at 361.003 kb on + strand, within GFF2762 at 361.003 kb on + strand, within GFF2762 at 361.027 kb on + strand, within GFF2762 at 361.027 kb on + strand, within GFF2762 at 361.027 kb on + strand, within GFF2762 at 361.027 kb on + strand, within GFF2762 at 361.028 kb on - strand, within GFF2762 at 361.028 kb on - strand, within GFF2762 at 361.028 kb on - strand, within GFF2762 at 361.028 kb on - strand, within GFF2762 at 361.108 kb on + strand, within GFF2762 at 361.192 kb on + strand, within GFF2762 at 361.193 kb on - strand, within GFF2762 at 361.489 kb on + strand, within GFF2762 at 361.490 kb on - strand, within GFF2762 at 361.490 kb on - strand, within GFF2762 at 361.714 kb on + strand, within GFF2762 at 361.714 kb on + strand, within GFF2762 at 361.714 kb on + strand, within GFF2762 at 361.714 kb on + strand, within GFF2762 at 361.714 kb on + strand, within GFF2762 at 361.715 kb on - strand, within GFF2762
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 358,387 + GFF2759 0.79 -0.4 358,507 + -0.2 358,507 + +0.1 358,507 + +0.2 358,507 + +0.2 358,507 + -2.1 358,507 + +0.8 358,507 + +0.5 358,507 + -0.5 358,508 - +0.2 358,508 - +0.6 358,774 - GFF2760 0.35 -0.6 358,788 + GFF2760 0.37 +0.0 358,788 + GFF2760 0.37 -0.1 358,788 + GFF2760 0.37 -0.7 358,788 + GFF2760 0.37 -0.5 358,789 - GFF2760 0.37 -0.3 358,789 - GFF2760 0.37 +0.0 358,789 - GFF2760 0.37 -0.6 359,013 + GFF2760 0.67 +0.0 359,013 + GFF2760 0.67 +0.1 359,013 + GFF2760 0.67 +0.5 359,014 - GFF2760 0.67 +0.4 359,014 - GFF2760 0.67 -0.4 359,014 - GFF2760 0.67 +0.3 359,014 - GFF2760 0.67 +0.9 359,106 + GFF2760 0.79 -0.4 359,157 + GFF2760 0.86 -0.1 359,220 + -0.3 359,220 + -0.1 359,221 - -0.1 359,221 - +0.6 359,221 - -0.3 359,245 + +0.3 359,266 + +0.7 359,318 - -0.6 359,318 - -0.7 359,318 - +1.0 359,338 - +0.5 359,338 - -0.4 359,427 + +0.3 359,428 - +0.7 359,532 + GFF2761 0.15 -0.5 359,533 - GFF2761 0.15 +0.0 359,533 - GFF2761 0.15 +0.6 359,533 - GFF2761 0.15 +0.1 359,688 + GFF2761 0.26 -0.3 359,967 + GFF2761 0.45 +0.7 359,967 + GFF2761 0.45 -1.0 359,968 - GFF2761 0.45 +0.1 359,968 - GFF2761 0.45 -0.1 359,968 - GFF2761 0.45 -0.2 359,968 - GFF2761 0.45 +0.2 359,968 - GFF2761 0.45 -0.2 360,042 + GFF2761 0.50 +0.7 360,042 + GFF2761 0.50 -0.6 360,042 + GFF2761 0.50 -0.7 360,043 - GFF2761 0.50 +0.9 360,043 - GFF2761 0.50 +0.2 360,043 - GFF2761 0.50 -0.0 360,043 - GFF2761 0.50 +0.9 360,096 + GFF2761 0.54 +1.5 360,292 - GFF2761 0.67 -0.0 360,315 + GFF2761 0.69 -0.5 360,315 + GFF2761 0.69 +1.0 360,315 + GFF2761 0.69 +0.1 360,315 + GFF2761 0.69 -0.8 360,316 - GFF2761 0.69 +0.3 360,316 - GFF2761 0.69 -1.4 360,316 - GFF2761 0.69 +0.2 360,316 - GFF2761 0.69 +0.3 360,541 - GFF2761 0.84 +0.4 360,549 + GFF2761 0.85 +0.3 360,565 - GFF2761 0.86 -0.2 360,585 + GFF2761 0.87 +0.0 360,628 - -1.4 360,781 + +1.9 360,781 + -0.2 360,782 - +0.1 360,782 - +1.2 360,782 - +0.6 360,782 - +1.9 360,782 - +0.2 360,782 - -0.3 360,796 + -0.5 360,797 - -0.7 360,797 - -0.1 361,003 + GFF2762 0.12 -0.1 361,003 + GFF2762 0.12 +0.3 361,003 + GFF2762 0.12 +0.2 361,003 + GFF2762 0.12 +0.4 361,027 + GFF2762 0.13 -0.3 361,027 + GFF2762 0.13 -0.3 361,027 + GFF2762 0.13 +0.2 361,027 + GFF2762 0.13 +0.2 361,028 - GFF2762 0.13 -1.1 361,028 - GFF2762 0.13 +0.5 361,028 - GFF2762 0.13 -0.3 361,028 - GFF2762 0.13 +0.7 361,108 + GFF2762 0.18 -0.3 361,192 + GFF2762 0.22 +0.2 361,193 - GFF2762 0.22 +0.9 361,489 + GFF2762 0.38 +0.4 361,490 - GFF2762 0.38 -0.2 361,490 - GFF2762 0.38 -0.3 361,714 + GFF2762 0.50 +0.2 361,714 + GFF2762 0.50 +0.4 361,714 + GFF2762 0.50 -0.5 361,714 + GFF2762 0.50 -0.8 361,714 + GFF2762 0.50 +0.0 361,715 - GFF2762 0.50 -0.9
Or see this region's nucleotide sequence