Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2730 and GFF2731 are separated by 24 nucleotides GFF2731 and GFF2732 overlap by 4 nucleotides GFF2732 and GFF2733 are separated by 114 nucleotides
GFF2730 - Biotin carboxylase (EC 6.3.4.14), at 324,206 to 326,035
GFF2730
GFF2731 - Two-component system response regulator, at 326,060 to 326,545
GFF2731
GFF2732 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 326,542 to 330,336
GFF2732
GFF2733 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 330,451 to 331,953
GFF2733
Position (kb) 326
327
328
329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 325.886 kb on + strand at 325.886 kb on + strand at 325.886 kb on + strand at 325.887 kb on - strand at 325.887 kb on - strand at 326.199 kb on + strand, within GFF2731 at 326.199 kb on + strand, within GFF2731 at 326.200 kb on - strand, within GFF2731 at 326.200 kb on - strand, within GFF2731 at 326.409 kb on + strand, within GFF2731 at 326.409 kb on + strand, within GFF2731 at 326.410 kb on - strand, within GFF2731 at 326.410 kb on - strand, within GFF2731 at 326.410 kb on - strand, within GFF2731 at 326.410 kb on - strand, within GFF2731 at 326.410 kb on - strand, within GFF2731 at 326.772 kb on - strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.814 kb on + strand at 326.815 kb on - strand at 326.815 kb on - strand at 326.815 kb on - strand at 326.815 kb on - strand at 326.815 kb on - strand at 326.816 kb on + strand at 326.817 kb on - strand at 326.817 kb on - strand at 326.879 kb on + strand at 326.879 kb on + strand at 326.879 kb on + strand at 326.879 kb on + strand at 326.879 kb on + strand at 326.879 kb on + strand at 326.879 kb on + strand at 326.879 kb on + strand at 326.880 kb on - strand at 326.880 kb on - strand at 326.880 kb on - strand at 326.880 kb on - strand at 326.885 kb on + strand at 326.885 kb on + strand at 326.885 kb on + strand at 326.885 kb on + strand at 326.885 kb on + strand at 326.885 kb on + strand at 326.886 kb on - strand at 326.886 kb on - strand at 326.886 kb on - strand at 327.143 kb on + strand, within GFF2732 at 327.143 kb on + strand, within GFF2732 at 327.144 kb on - strand, within GFF2732 at 327.248 kb on + strand, within GFF2732 at 327.248 kb on + strand, within GFF2732 at 327.249 kb on - strand, within GFF2732 at 327.249 kb on - strand, within GFF2732 at 327.328 kb on + strand, within GFF2732 at 327.446 kb on + strand, within GFF2732 at 327.447 kb on - strand, within GFF2732 at 327.447 kb on - strand, within GFF2732 at 327.447 kb on - strand, within GFF2732 at 327.576 kb on - strand, within GFF2732 at 327.678 kb on - strand, within GFF2732 at 327.678 kb on - strand, within GFF2732 at 327.678 kb on - strand, within GFF2732 at 327.678 kb on - strand, within GFF2732 at 327.872 kb on + strand, within GFF2732 at 327.872 kb on + strand, within GFF2732 at 327.872 kb on + strand, within GFF2732 at 327.873 kb on - strand, within GFF2732 at 327.873 kb on - strand, within GFF2732 at 327.873 kb on - strand, within GFF2732 at 327.887 kb on + strand, within GFF2732 at 327.887 kb on + strand, within GFF2732 at 327.887 kb on + strand, within GFF2732 at 327.888 kb on - strand, within GFF2732 at 327.888 kb on - strand, within GFF2732 at 327.888 kb on - strand, within GFF2732 at 328.025 kb on + strand, within GFF2732 at 328.025 kb on + strand, within GFF2732 at 328.025 kb on + strand, within GFF2732 at 328.025 kb on + strand, within GFF2732 at 328.025 kb on + strand, within GFF2732 at 328.026 kb on - strand, within GFF2732 at 328.026 kb on - strand, within GFF2732 at 328.026 kb on - strand, within GFF2732 at 328.026 kb on - strand, within GFF2732 at 328.026 kb on - strand, within GFF2732 at 328.043 kb on + strand, within GFF2732 at 328.044 kb on - strand, within GFF2732 at 328.093 kb on + strand, within GFF2732 at 328.094 kb on - strand, within GFF2732 at 328.094 kb on - strand, within GFF2732 at 328.094 kb on - strand, within GFF2732 at 328.094 kb on - strand, within GFF2732 at 328.098 kb on - strand, within GFF2732 at 328.295 kb on + strand, within GFF2732 at 328.295 kb on + strand, within GFF2732 at 328.295 kb on + strand, within GFF2732 at 328.419 kb on - strand, within GFF2732 at 328.457 kb on + strand, within GFF2732 at 328.457 kb on + strand, within GFF2732 at 328.457 kb on + strand, within GFF2732 at 328.457 kb on + strand, within GFF2732 at 328.457 kb on + strand, within GFF2732 at 328.458 kb on - strand, within GFF2732 at 328.458 kb on - strand, within GFF2732 at 328.458 kb on - strand, within GFF2732 at 328.458 kb on - strand, within GFF2732 at 328.505 kb on + strand, within GFF2732 at 328.505 kb on + strand, within GFF2732 at 328.506 kb on - strand, within GFF2732 at 328.506 kb on - strand, within GFF2732 at 328.646 kb on + strand, within GFF2732 at 328.647 kb on - strand, within GFF2732 at 328.647 kb on - strand, within GFF2732 at 328.647 kb on - strand, within GFF2732 at 328.662 kb on - strand, within GFF2732 at 328.829 kb on + strand, within GFF2732 at 328.830 kb on - strand, within GFF2732 at 328.868 kb on + strand, within GFF2732 at 328.869 kb on - strand, within GFF2732 at 328.869 kb on - strand, within GFF2732 at 329.192 kb on + strand, within GFF2732 at 329.192 kb on + strand, within GFF2732 at 329.280 kb on - strand, within GFF2732 at 330.134 kb on + strand at 330.135 kb on - strand at 330.135 kb on - strand at 330.263 kb on + strand at 330.263 kb on + strand at 330.263 kb on + strand at 330.264 kb on - strand at 330.413 kb on - strand at 330.441 kb on + strand at 330.442 kb on - strand at 330.442 kb on - strand at 330.452 kb on + strand at 330.452 kb on + strand at 330.453 kb on - strand at 330.453 kb on - strand at 330.463 kb on + strand at 330.464 kb on - strand at 330.510 kb on - strand at 330.821 kb on + strand, within GFF2733 at 330.821 kb on + strand, within GFF2733 at 330.821 kb on + strand, within GFF2733 at 330.822 kb on - strand, within GFF2733 at 330.822 kb on - strand, within GFF2733 at 330.899 kb on + strand, within GFF2733 at 330.899 kb on + strand, within GFF2733 at 330.899 kb on + strand, within GFF2733 at 330.899 kb on + strand, within GFF2733 at 330.899 kb on + strand, within GFF2733 at 330.899 kb on + strand, within GFF2733 at 330.900 kb on - strand, within GFF2733 at 330.900 kb on - strand, within GFF2733 at 330.900 kb on - strand, within GFF2733 at 330.900 kb on - strand, within GFF2733 at 330.900 kb on - strand, within GFF2733 at 330.900 kb on - strand, within GFF2733
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 325,886 + -1.4 325,886 + +1.3 325,886 + +0.6 325,887 - +0.5 325,887 - -0.4 326,199 + GFF2731 0.29 -2.0 326,199 + GFF2731 0.29 -1.3 326,200 - GFF2731 0.29 -2.7 326,200 - GFF2731 0.29 -0.3 326,409 + GFF2731 0.72 -1.7 326,409 + GFF2731 0.72 -0.7 326,410 - GFF2731 0.72 -3.4 326,410 - GFF2731 0.72 -3.7 326,410 - GFF2731 0.72 -2.1 326,410 - GFF2731 0.72 -1.6 326,410 - GFF2731 0.72 -1.1 326,772 - +2.3 326,814 + +2.1 326,814 + +0.5 326,814 + +1.2 326,814 + +0.7 326,814 + +0.8 326,814 + +0.8 326,815 - +0.9 326,815 - +1.3 326,815 - +0.7 326,815 - +0.2 326,815 - +0.5 326,816 + +0.6 326,817 - +0.5 326,817 - +0.1 326,879 + +1.0 326,879 + +0.6 326,879 + +0.9 326,879 + +1.9 326,879 + +1.5 326,879 + +0.1 326,879 + +0.5 326,879 + +1.2 326,880 - +0.2 326,880 - +1.2 326,880 - +0.4 326,880 - +1.0 326,885 + +0.9 326,885 + +0.9 326,885 + +1.2 326,885 + +0.6 326,885 + +2.0 326,885 + +1.0 326,886 - +1.1 326,886 - +0.5 326,886 - +0.7 327,143 + GFF2732 0.16 +1.2 327,143 + GFF2732 0.16 +0.7 327,144 - GFF2732 0.16 +0.8 327,248 + GFF2732 0.19 +0.0 327,248 + GFF2732 0.19 +1.2 327,249 - GFF2732 0.19 +0.7 327,249 - GFF2732 0.19 +0.4 327,328 + GFF2732 0.21 +0.7 327,446 + GFF2732 0.24 -0.1 327,447 - GFF2732 0.24 +1.5 327,447 - GFF2732 0.24 +1.3 327,447 - GFF2732 0.24 +0.8 327,576 - GFF2732 0.27 -0.2 327,678 - GFF2732 0.30 +0.6 327,678 - GFF2732 0.30 +0.6 327,678 - GFF2732 0.30 +0.2 327,678 - GFF2732 0.30 +0.8 327,872 + GFF2732 0.35 +1.3 327,872 + GFF2732 0.35 +0.4 327,872 + GFF2732 0.35 +0.4 327,873 - GFF2732 0.35 +0.3 327,873 - GFF2732 0.35 +0.4 327,873 - GFF2732 0.35 +0.6 327,887 + GFF2732 0.35 +0.8 327,887 + GFF2732 0.35 +0.6 327,887 + GFF2732 0.35 -1.4 327,888 - GFF2732 0.35 +1.2 327,888 - GFF2732 0.35 +1.2 327,888 - GFF2732 0.35 +2.5 328,025 + GFF2732 0.39 +1.0 328,025 + GFF2732 0.39 +0.1 328,025 + GFF2732 0.39 -0.1 328,025 + GFF2732 0.39 +1.0 328,025 + GFF2732 0.39 +0.9 328,026 - GFF2732 0.39 +1.3 328,026 - GFF2732 0.39 +0.8 328,026 - GFF2732 0.39 +2.1 328,026 - GFF2732 0.39 +2.2 328,026 - GFF2732 0.39 +0.9 328,043 + GFF2732 0.40 +0.6 328,044 - GFF2732 0.40 -0.1 328,093 + GFF2732 0.41 +1.7 328,094 - GFF2732 0.41 +1.2 328,094 - GFF2732 0.41 +0.8 328,094 - GFF2732 0.41 +0.9 328,094 - GFF2732 0.41 -0.2 328,098 - GFF2732 0.41 +0.6 328,295 + GFF2732 0.46 +1.3 328,295 + GFF2732 0.46 +1.2 328,295 + GFF2732 0.46 +0.8 328,419 - GFF2732 0.49 -1.1 328,457 + GFF2732 0.50 +0.6 328,457 + GFF2732 0.50 +1.3 328,457 + GFF2732 0.50 +0.8 328,457 + GFF2732 0.50 -0.2 328,457 + GFF2732 0.50 +2.8 328,458 - GFF2732 0.50 +1.7 328,458 - GFF2732 0.50 +0.6 328,458 - GFF2732 0.50 +0.5 328,458 - GFF2732 0.50 +0.6 328,505 + GFF2732 0.52 -1.4 328,505 + GFF2732 0.52 +0.4 328,506 - GFF2732 0.52 +0.8 328,506 - GFF2732 0.52 +1.7 328,646 + GFF2732 0.55 +0.0 328,647 - GFF2732 0.55 +1.0 328,647 - GFF2732 0.55 +3.7 328,647 - GFF2732 0.55 +0.7 328,662 - GFF2732 0.56 -0.0 328,829 + GFF2732 0.60 -0.1 328,830 - GFF2732 0.60 +1.5 328,868 + GFF2732 0.61 +0.6 328,869 - GFF2732 0.61 +0.6 328,869 - GFF2732 0.61 +0.9 329,192 + GFF2732 0.70 +0.3 329,192 + GFF2732 0.70 +0.8 329,280 - GFF2732 0.72 +0.9 330,134 + +0.9 330,135 - +1.0 330,135 - +0.2 330,263 + +0.4 330,263 + +1.9 330,263 + +0.8 330,264 - +0.6 330,413 - +0.1 330,441 + +0.5 330,442 - -0.6 330,442 - +0.5 330,452 + +0.5 330,452 + +0.5 330,453 - -0.3 330,453 - +0.3 330,463 + +0.6 330,464 - +0.5 330,510 - -0.1 330,821 + GFF2733 0.25 +0.1 330,821 + GFF2733 0.25 -0.4 330,821 + GFF2733 0.25 +0.5 330,822 - GFF2733 0.25 -0.4 330,822 - GFF2733 0.25 -0.2 330,899 + GFF2733 0.30 -0.7 330,899 + GFF2733 0.30 +0.1 330,899 + GFF2733 0.30 -0.1 330,899 + GFF2733 0.30 -0.4 330,899 + GFF2733 0.30 -2.3 330,899 + GFF2733 0.30 -0.6 330,900 - GFF2733 0.30 -0.8 330,900 - GFF2733 0.30 +0.1 330,900 - GFF2733 0.30 +0.0 330,900 - GFF2733 0.30 -0.1 330,900 - GFF2733 0.30 +0.6 330,900 - GFF2733 0.30 +0.2
Or see this region's nucleotide sequence