Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2728 and GFF2729 are separated by 200 nucleotides GFF2729 and GFF2730 are separated by 112 nucleotides
GFF2728 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 320,606 to 323,590
GFF2728
GFF2729 - hypothetical protein, at 323,791 to 324,093
GFF2729
GFF2730 - Biotin carboxylase (EC 6.3.4.14), at 324,206 to 326,035
GFF2730
Position (kb) 323
324
325 Strain fitness (log2 ratio) -1
0
1
2 at 323.073 kb on + strand, within GFF2728 at 323.073 kb on + strand, within GFF2728 at 323.073 kb on + strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.074 kb on - strand, within GFF2728 at 323.565 kb on + strand at 323.565 kb on + strand at 323.565 kb on + strand at 323.565 kb on + strand at 323.565 kb on + strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.566 kb on - strand at 323.603 kb on + strand at 323.603 kb on + strand at 323.603 kb on + strand at 323.604 kb on - strand at 323.604 kb on - strand at 323.604 kb on - strand at 323.640 kb on - strand at 323.663 kb on - strand at 323.687 kb on + strand at 323.687 kb on + strand at 323.687 kb on + strand at 323.687 kb on + strand at 323.688 kb on - strand at 323.688 kb on - strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.695 kb on + strand at 323.818 kb on + strand at 323.818 kb on + strand at 323.818 kb on + strand at 323.819 kb on - strand at 323.819 kb on - strand at 323.819 kb on - strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.088 kb on + strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.089 kb on - strand at 324.638 kb on + strand, within GFF2730 at 324.789 kb on - strand, within GFF2730
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 323,073 + GFF2728 0.83 +0.1 323,073 + GFF2728 0.83 +0.4 323,073 + GFF2728 0.83 +1.2 323,074 - GFF2728 0.83 -0.6 323,074 - GFF2728 0.83 -0.6 323,074 - GFF2728 0.83 +0.2 323,074 - GFF2728 0.83 -0.3 323,565 + +1.2 323,565 + -0.4 323,565 + -0.4 323,565 + -0.7 323,565 + +0.3 323,566 - +0.2 323,566 - +2.2 323,566 - -0.9 323,566 - +0.3 323,566 - -0.0 323,603 + +0.2 323,603 + -0.1 323,603 + -0.2 323,604 - -0.6 323,604 - +0.1 323,604 - -0.7 323,640 - -0.1 323,663 - -0.6 323,687 + +0.4 323,687 + +0.2 323,687 + +1.2 323,687 + +0.0 323,688 - -1.3 323,688 - -0.3 323,695 + -0.6 323,695 + -0.2 323,695 + +2.2 323,695 + +0.2 323,695 + -0.2 323,818 + +0.1 323,818 + -0.5 323,818 + +0.0 323,819 - -0.7 323,819 - -0.8 323,819 - +0.3 324,088 + +0.6 324,088 + -1.0 324,088 + -0.1 324,088 + -0.0 324,088 + -0.3 324,088 + +0.0 324,088 + -0.4 324,089 - -0.4 324,089 - +0.5 324,089 - -0.5 324,089 - -0.5 324,089 - -0.2 324,089 - -0.1 324,089 - +0.0 324,089 - +0.3 324,638 + GFF2730 0.24 -0.3 324,789 - GFF2730 0.32 -0.0
Or see this region's nucleotide sequence