Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2706

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2704 and GFF2705 are separated by 139 nucleotidesGFF2705 and GFF2706 are separated by 9 nucleotidesGFF2706 and GFF2707 are separated by 13 nucleotidesGFF2707 and GFF2708 are separated by 16 nucleotides GFF2704 - putative exported protein, at 296,120 to 296,716 GFF2704 GFF2705 - hypothetical protein, at 296,856 to 297,209 GFF2705 GFF2706 - Transcriptional regulatory protein, at 297,219 to 298,142 GFF2706 GFF2707 - Putative decarboxylase, at 298,156 to 298,953 GFF2707 GFF2708 - Tricarboxylate transport protein TctC, at 298,970 to 299,938 GFF2708 Position (kb) 297 298 299Strain fitness (log2 ratio) -2 -1 0 1 2at 296.232 kb on + strand, within GFF2704at 296.247 kb on + strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.248 kb on - strand, within GFF2704at 296.263 kb on - strand, within GFF2704at 296.409 kb on + strand, within GFF2704at 296.410 kb on - strand, within GFF2704at 296.410 kb on - strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.436 kb on + strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.437 kb on - strand, within GFF2704at 296.574 kb on + strand, within GFF2704at 296.574 kb on + strand, within GFF2704at 296.574 kb on + strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.575 kb on - strand, within GFF2704at 296.640 kb on + strand, within GFF2704at 296.640 kb on + strand, within GFF2704at 296.641 kb on - strand, within GFF2704at 296.641 kb on - strand, within GFF2704at 296.649 kb on + strand, within GFF2704at 296.649 kb on + strand, within GFF2704at 296.650 kb on - strand, within GFF2704at 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.697 kb on + strandat 296.698 kb on - strandat 296.698 kb on - strandat 296.703 kb on + strandat 296.704 kb on - strandat 296.704 kb on - strandat 296.728 kb on + strandat 296.729 kb on - strandat 297.060 kb on + strand, within GFF2705at 297.060 kb on + strand, within GFF2705at 297.367 kb on - strand, within GFF2706at 297.781 kb on + strand, within GFF2706at 297.846 kb on + strand, within GFF2706at 297.846 kb on + strand, within GFF2706at 297.846 kb on + strand, within GFF2706at 297.847 kb on - strand, within GFF2706at 297.847 kb on - strand, within GFF2706at 297.847 kb on - strand, within GFF2706at 297.847 kb on - strand, within GFF2706at 297.856 kb on + strand, within GFF2706at 297.938 kb on - strand, within GFF2706at 297.938 kb on - strand, within GFF2706at 297.938 kb on - strand, within GFF2706at 298.180 kb on + strandat 298.422 kb on - strand, within GFF2707at 298.559 kb on + strand, within GFF2707at 298.559 kb on + strand, within GFF2707at 298.712 kb on + strand, within GFF2707at 298.713 kb on - strand, within GFF2707at 298.713 kb on - strand, within GFF2707at 298.784 kb on + strand, within GFF2707at 298.784 kb on + strand, within GFF2707at 298.784 kb on + strand, within GFF2707at 298.925 kb on + strandat 298.935 kb on - strandat 299.130 kb on + strand, within GFF2708

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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296,232 + GFF2704 0.19 -2.1
296,247 + GFF2704 0.21 +1.1
296,248 - GFF2704 0.21 -0.3
296,248 - GFF2704 0.21 -0.1
296,248 - GFF2704 0.21 -0.6
296,248 - GFF2704 0.21 -0.1
296,248 - GFF2704 0.21 +0.2
296,263 - GFF2704 0.24 -0.1
296,409 + GFF2704 0.48 -0.4
296,410 - GFF2704 0.49 -1.0
296,410 - GFF2704 0.49 -0.6
296,436 + GFF2704 0.53 -1.1
296,436 + GFF2704 0.53 -0.3
296,436 + GFF2704 0.53 -0.1
296,436 + GFF2704 0.53 -1.4
296,437 - GFF2704 0.53 -0.1
296,437 - GFF2704 0.53 -0.2
296,437 - GFF2704 0.53 -0.5
296,437 - GFF2704 0.53 +0.4
296,437 - GFF2704 0.53 +0.2
296,437 - GFF2704 0.53 -0.7
296,437 - GFF2704 0.53 +0.9
296,437 - GFF2704 0.53 +0.3
296,574 + GFF2704 0.76 +0.3
296,574 + GFF2704 0.76 +0.9
296,574 + GFF2704 0.76 +0.9
296,575 - GFF2704 0.76 +0.0
296,575 - GFF2704 0.76 -0.4
296,575 - GFF2704 0.76 -1.1
296,575 - GFF2704 0.76 -0.7
296,575 - GFF2704 0.76 -0.1
296,640 + GFF2704 0.87 +0.3
296,640 + GFF2704 0.87 -0.2
296,641 - GFF2704 0.87 +0.3
296,641 - GFF2704 0.87 -0.8
296,649 + GFF2704 0.89 +0.5
296,649 + GFF2704 0.89 -0.2
296,650 - GFF2704 0.89 -0.3
296,697 + -0.0
296,697 + +0.2
296,697 + +0.1
296,697 + -0.3
296,697 + +0.1
296,697 + -0.8
296,698 - -0.4
296,698 - -0.1
296,703 + -0.2
296,704 - +0.7
296,704 - +0.2
296,728 + -0.7
296,729 - +0.9
297,060 + GFF2705 0.58 +0.9
297,060 + GFF2705 0.58 -0.2
297,367 - GFF2706 0.16 +1.2
297,781 + GFF2706 0.61 -0.1
297,846 + GFF2706 0.68 +0.1
297,846 + GFF2706 0.68 -0.7
297,846 + GFF2706 0.68 +0.9
297,847 - GFF2706 0.68 +1.9
297,847 - GFF2706 0.68 -0.5
297,847 - GFF2706 0.68 +0.4
297,847 - GFF2706 0.68 -0.6
297,856 + GFF2706 0.69 -0.8
297,938 - GFF2706 0.78 +0.6
297,938 - GFF2706 0.78 +0.2
297,938 - GFF2706 0.78 +0.9
298,180 + +0.0
298,422 - GFF2707 0.33 +0.2
298,559 + GFF2707 0.51 +0.6
298,559 + GFF2707 0.51 -0.1
298,712 + GFF2707 0.70 -1.1
298,713 - GFF2707 0.70 -0.7
298,713 - GFF2707 0.70 -0.3
298,784 + GFF2707 0.79 -0.8
298,784 + GFF2707 0.79 +0.6
298,784 + GFF2707 0.79 +0.2
298,925 + -0.4
298,935 - -0.9
299,130 + GFF2708 0.17 -0.2

Or see this region's nucleotide sequence