Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2650 and GFF2651 overlap by 4 nucleotides GFF2651 and GFF2652 are separated by 117 nucleotides GFF2652 and GFF2653 are separated by 1 nucleotides GFF2653 and GFF2654 overlap by 4 nucleotides GFF2654 and GFF2655 overlap by 4 nucleotides
GFF2650 - Glutathione synthetase (EC 6.3.2.3), at 245,084 to 246,031
GFF2650
GFF2651 - hypothetical protein, at 246,028 to 246,282
GFF2651
GFF2652 - Transcriptional regulator, MarR family, at 246,400 to 246,888
GFF2652
GFF2653 - Na(+) H(+) antiporter subunit G, at 246,890 to 247,291
GFF2653
GFF2654 - Na(+) H(+) antiporter subunit F, at 247,288 to 247,566
GFF2654
GFF2655 - Na(+) H(+) antiporter subunit E, at 247,563 to 248,054
GFF2655
Position (kb) 246
247 Strain fitness (log2 ratio) -1
0
1 at 245.684 kb on + strand, within GFF2650 at 246.115 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.238 kb on + strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.239 kb on - strand, within GFF2651 at 246.313 kb on + strand at 246.313 kb on + strand at 246.314 kb on - strand at 246.318 kb on + strand at 246.318 kb on + strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.319 kb on - strand at 246.419 kb on - strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.427 kb on + strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.428 kb on - strand at 246.431 kb on - strand at 246.431 kb on - strand at 246.431 kb on - strand at 246.478 kb on + strand, within GFF2652 at 246.631 kb on + strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.632 kb on - strand, within GFF2652 at 246.697 kb on + strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.698 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652 at 246.836 kb on - strand, within GFF2652 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.101 kb on + strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.102 kb on - strand, within GFF2653 at 247.379 kb on + strand, within GFF2654 at 247.379 kb on + strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.380 kb on - strand, within GFF2654 at 247.436 kb on + strand, within GFF2654 at 247.485 kb on - strand, within GFF2654 at 247.520 kb on + strand, within GFF2654 at 247.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 245,684 + GFF2650 0.63 -1.1 246,115 + GFF2651 0.34 +0.3 246,238 + GFF2651 0.82 +0.0 246,238 + GFF2651 0.82 +0.3 246,238 + GFF2651 0.82 -0.1 246,238 + GFF2651 0.82 +0.2 246,239 - GFF2651 0.83 -0.1 246,239 - GFF2651 0.83 +0.1 246,239 - GFF2651 0.83 -0.3 246,239 - GFF2651 0.83 +0.5 246,239 - GFF2651 0.83 +0.9 246,313 + -0.6 246,313 + -0.2 246,314 - +0.1 246,318 + -0.2 246,318 + -0.0 246,319 - +0.1 246,319 - -0.9 246,319 - -0.8 246,319 - +0.8 246,419 - -0.1 246,427 + -0.2 246,427 + -0.3 246,427 + -0.2 246,427 + -0.2 246,427 + -0.4 246,428 - -0.1 246,428 - +0.0 246,428 - -0.9 246,428 - +0.9 246,428 - +0.1 246,431 - -0.5 246,431 - +0.8 246,431 - -0.1 246,478 + GFF2652 0.16 +0.9 246,631 + GFF2652 0.47 +0.2 246,632 - GFF2652 0.47 +0.6 246,632 - GFF2652 0.47 +0.9 246,697 + GFF2652 0.61 -1.1 246,698 - GFF2652 0.61 +0.4 246,698 - GFF2652 0.61 +0.7 246,836 - GFF2652 0.89 +0.2 246,836 - GFF2652 0.89 +0.7 247,101 + GFF2653 0.52 +0.1 247,101 + GFF2653 0.52 -0.9 247,101 + GFF2653 0.52 -0.3 247,101 + GFF2653 0.52 -0.8 247,101 + GFF2653 0.52 -0.1 247,101 + GFF2653 0.52 -1.1 247,102 - GFF2653 0.53 -0.2 247,102 - GFF2653 0.53 -0.3 247,102 - GFF2653 0.53 -0.4 247,102 - GFF2653 0.53 +0.5 247,102 - GFF2653 0.53 +0.1 247,102 - GFF2653 0.53 +0.1 247,379 + GFF2654 0.33 -0.4 247,379 + GFF2654 0.33 -0.2 247,380 - GFF2654 0.33 +1.1 247,380 - GFF2654 0.33 +1.0 247,380 - GFF2654 0.33 +0.3 247,436 + GFF2654 0.53 -0.3 247,485 - GFF2654 0.71 +0.2 247,520 + GFF2654 0.83 -0.1 247,594 + -0.1
Or see this region's nucleotide sequence