Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2507 and GFF2508 are separated by 55 nucleotides GFF2508 and GFF2509 are separated by 130 nucleotides GFF2509 and GFF2510 are separated by 189 nucleotides GFF2510 and GFF2511 are separated by 63 nucleotides
GFF2507 - Protein serine/threonine phosphatase PrpC, regulation of stationary phase, at 93,651 to 94,436
GFF2507
GFF2508 - FIG00576366: hypothetical protein, at 94,492 to 95,121
GFF2508
GFF2509 - CAMP phosphodiesterases class-II:Metallo-beta-lactamase superfamily, at 95,252 to 96,118
GFF2509
GFF2510 - Type IV pilin PilA, at 96,308 to 96,850
GFF2510
GFF2511 - Molybdenum cofactor biosynthesis protein MoaC, at 96,914 to 97,408
GFF2511
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 94.361 kb on + strand at 94.372 kb on + strand at 94.372 kb on + strand at 94.380 kb on + strand at 94.380 kb on + strand at 94.381 kb on - strand at 94.434 kb on + strand at 94.434 kb on + strand at 94.434 kb on + strand at 94.435 kb on - strand at 94.435 kb on - strand at 94.435 kb on - strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.471 kb on + strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.472 kb on - strand at 94.475 kb on + strand at 94.475 kb on + strand at 94.475 kb on + strand at 94.475 kb on + strand at 94.475 kb on + strand at 94.476 kb on - strand at 94.476 kb on - strand at 94.476 kb on - strand at 94.476 kb on - strand at 94.476 kb on - strand at 94.538 kb on + strand at 94.538 kb on + strand at 94.538 kb on + strand at 94.538 kb on + strand at 94.538 kb on + strand at 94.539 kb on - strand at 94.539 kb on - strand at 94.539 kb on - strand at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.579 kb on + strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.580 kb on - strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.687 kb on + strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.688 kb on - strand, within GFF2508 at 94.753 kb on + strand, within GFF2508 at 94.753 kb on + strand, within GFF2508 at 94.753 kb on + strand, within GFF2508 at 94.753 kb on + strand, within GFF2508 at 94.753 kb on + strand, within GFF2508 at 94.753 kb on + strand, within GFF2508 at 94.754 kb on - strand, within GFF2508 at 94.754 kb on - strand, within GFF2508 at 94.754 kb on - strand, within GFF2508 at 94.754 kb on - strand, within GFF2508 at 94.754 kb on - strand, within GFF2508 at 94.792 kb on + strand, within GFF2508 at 94.792 kb on + strand, within GFF2508 at 94.792 kb on + strand, within GFF2508 at 94.792 kb on + strand, within GFF2508 at 94.793 kb on - strand, within GFF2508 at 94.793 kb on - strand, within GFF2508 at 94.793 kb on - strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.987 kb on + strand, within GFF2508 at 94.988 kb on - strand, within GFF2508 at 94.988 kb on - strand, within GFF2508 at 94.988 kb on - strand, within GFF2508 at 95.328 kb on + strand at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.981 kb on + strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 95.982 kb on - strand, within GFF2509 at 96.223 kb on + strand at 96.223 kb on + strand at 96.224 kb on - strand at 96.224 kb on - strand at 96.224 kb on - strand at 96.224 kb on - strand at 96.262 kb on + strand at 96.262 kb on + strand at 96.262 kb on + strand at 96.263 kb on - strand at 96.276 kb on + strand at 96.379 kb on + strand, within GFF2510 at 96.379 kb on + strand, within GFF2510 at 96.407 kb on + strand, within GFF2510 at 96.407 kb on + strand, within GFF2510 at 96.408 kb on - strand, within GFF2510 at 96.408 kb on - strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.416 kb on + strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.417 kb on - strand, within GFF2510 at 96.658 kb on + strand, within GFF2510 at 96.658 kb on + strand, within GFF2510 at 96.659 kb on - strand, within GFF2510 at 96.725 kb on + strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.726 kb on - strand, within GFF2510 at 96.827 kb on + strand at 96.827 kb on + strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.828 kb on - strand at 96.848 kb on + strand at 96.848 kb on + strand at 96.848 kb on + strand at 96.849 kb on - strand at 96.860 kb on + strand at 96.860 kb on + strand at 96.861 kb on - strand at 97.011 kb on + strand, within GFF2511 at 97.011 kb on + strand, within GFF2511 at 97.011 kb on + strand, within GFF2511 at 97.012 kb on - strand, within GFF2511 at 97.012 kb on - strand, within GFF2511
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 94,361 + -1.3 94,372 + -0.7 94,372 + -2.6 94,380 + -1.6 94,380 + -1.9 94,381 - -1.7 94,434 + +0.7 94,434 + -0.8 94,434 + -1.0 94,435 - -0.1 94,435 - -0.1 94,435 - +0.3 94,471 + -0.5 94,471 + +0.9 94,471 + +0.3 94,471 + +0.7 94,471 + +1.1 94,471 + +1.6 94,471 + +0.1 94,471 + +0.6 94,471 + +0.0 94,471 + +0.1 94,471 + +0.0 94,472 - +0.6 94,472 - -0.2 94,472 - -0.7 94,472 - -0.5 94,472 - -0.3 94,472 - +0.3 94,472 - -0.9 94,472 - -0.3 94,472 - +1.4 94,472 - +0.2 94,472 - -1.5 94,472 - +0.3 94,475 + -0.4 94,475 + +0.5 94,475 + +0.7 94,475 + +0.5 94,475 + -0.5 94,476 - +0.6 94,476 - +0.9 94,476 - -0.1 94,476 - +0.7 94,476 - +1.3 94,538 + -0.3 94,538 + +0.4 94,538 + -1.0 94,538 + -0.5 94,538 + +0.5 94,539 - -1.0 94,539 - -0.3 94,539 - -0.6 94,579 + GFF2508 0.14 +0.2 94,579 + GFF2508 0.14 -0.7 94,579 + GFF2508 0.14 -0.7 94,579 + GFF2508 0.14 +2.9 94,579 + GFF2508 0.14 -0.4 94,579 + GFF2508 0.14 -1.4 94,579 + GFF2508 0.14 -0.8 94,579 + GFF2508 0.14 -0.3 94,579 + GFF2508 0.14 -0.8 94,579 + GFF2508 0.14 -0.9 94,579 + GFF2508 0.14 -0.4 94,579 + GFF2508 0.14 -1.5 94,580 - GFF2508 0.14 -0.7 94,580 - GFF2508 0.14 -1.4 94,580 - GFF2508 0.14 -0.6 94,580 - GFF2508 0.14 -0.1 94,580 - GFF2508 0.14 -0.5 94,580 - GFF2508 0.14 -0.7 94,580 - GFF2508 0.14 -0.7 94,580 - GFF2508 0.14 -0.5 94,580 - GFF2508 0.14 -1.1 94,580 - GFF2508 0.14 -0.6 94,580 - GFF2508 0.14 +0.9 94,580 - GFF2508 0.14 -0.4 94,580 - GFF2508 0.14 -1.4 94,687 + GFF2508 0.31 -0.1 94,687 + GFF2508 0.31 -0.3 94,687 + GFF2508 0.31 -0.3 94,687 + GFF2508 0.31 -0.1 94,687 + GFF2508 0.31 +0.3 94,687 + GFF2508 0.31 -0.9 94,687 + GFF2508 0.31 +0.2 94,687 + GFF2508 0.31 -0.3 94,687 + GFF2508 0.31 -0.9 94,687 + GFF2508 0.31 -1.4 94,687 + GFF2508 0.31 -0.1 94,687 + GFF2508 0.31 -0.5 94,687 + GFF2508 0.31 -0.4 94,688 - GFF2508 0.31 -1.1 94,688 - GFF2508 0.31 +0.2 94,688 - GFF2508 0.31 -0.7 94,688 - GFF2508 0.31 -1.3 94,688 - GFF2508 0.31 -1.1 94,688 - GFF2508 0.31 +1.0 94,688 - GFF2508 0.31 -0.4 94,688 - GFF2508 0.31 -0.2 94,753 + GFF2508 0.41 -1.4 94,753 + GFF2508 0.41 +0.3 94,753 + GFF2508 0.41 -2.4 94,753 + GFF2508 0.41 -0.5 94,753 + GFF2508 0.41 -0.4 94,753 + GFF2508 0.41 -1.3 94,754 - GFF2508 0.42 +0.9 94,754 - GFF2508 0.42 -0.1 94,754 - GFF2508 0.42 -0.5 94,754 - GFF2508 0.42 -0.8 94,754 - GFF2508 0.42 -0.5 94,792 + GFF2508 0.48 +0.3 94,792 + GFF2508 0.48 +1.2 94,792 + GFF2508 0.48 +0.5 94,792 + GFF2508 0.48 +0.3 94,793 - GFF2508 0.48 +0.2 94,793 - GFF2508 0.48 +0.7 94,793 - GFF2508 0.48 +0.9 94,987 + GFF2508 0.79 +0.5 94,987 + GFF2508 0.79 +0.9 94,987 + GFF2508 0.79 +0.5 94,987 + GFF2508 0.79 +0.2 94,987 + GFF2508 0.79 -0.4 94,987 + GFF2508 0.79 +0.7 94,987 + GFF2508 0.79 +0.4 94,987 + GFF2508 0.79 +0.5 94,988 - GFF2508 0.79 -1.7 94,988 - GFF2508 0.79 +0.5 94,988 - GFF2508 0.79 -0.0 95,328 + +0.4 95,981 + GFF2509 0.84 -0.3 95,981 + GFF2509 0.84 +0.8 95,981 + GFF2509 0.84 +0.4 95,981 + GFF2509 0.84 -0.8 95,981 + GFF2509 0.84 +0.4 95,981 + GFF2509 0.84 -0.0 95,981 + GFF2509 0.84 +0.6 95,982 - GFF2509 0.84 +1.6 95,982 - GFF2509 0.84 +0.4 95,982 - GFF2509 0.84 +0.2 95,982 - GFF2509 0.84 +1.1 95,982 - GFF2509 0.84 +0.4 95,982 - GFF2509 0.84 -0.1 95,982 - GFF2509 0.84 +0.1 95,982 - GFF2509 0.84 +0.4 95,982 - GFF2509 0.84 +1.3 96,223 + +0.9 96,223 + -0.0 96,224 - +0.0 96,224 - +0.4 96,224 - +1.3 96,224 - +0.2 96,262 + +0.2 96,262 + +1.6 96,262 + -1.2 96,263 - +0.4 96,276 + -1.7 96,379 + GFF2510 0.13 -0.1 96,379 + GFF2510 0.13 -0.2 96,407 + GFF2510 0.18 -0.5 96,407 + GFF2510 0.18 +0.3 96,408 - GFF2510 0.18 +1.1 96,408 - GFF2510 0.18 +0.7 96,416 + GFF2510 0.20 -0.9 96,416 + GFF2510 0.20 +0.2 96,416 + GFF2510 0.20 +0.2 96,416 + GFF2510 0.20 -0.5 96,417 - GFF2510 0.20 +0.9 96,417 - GFF2510 0.20 -1.4 96,417 - GFF2510 0.20 -1.0 96,417 - GFF2510 0.20 -0.1 96,417 - GFF2510 0.20 -0.3 96,417 - GFF2510 0.20 +0.2 96,417 - GFF2510 0.20 -0.7 96,417 - GFF2510 0.20 +0.3 96,417 - GFF2510 0.20 -0.2 96,417 - GFF2510 0.20 -0.8 96,658 + GFF2510 0.64 +0.9 96,658 + GFF2510 0.64 +0.0 96,659 - GFF2510 0.65 -1.1 96,725 + GFF2510 0.77 +0.3 96,726 - GFF2510 0.77 -0.4 96,726 - GFF2510 0.77 +0.4 96,726 - GFF2510 0.77 +1.6 96,726 - GFF2510 0.77 +0.4 96,726 - GFF2510 0.77 -0.0 96,827 + +0.3 96,827 + +0.5 96,828 - -0.3 96,828 - +0.4 96,828 - -0.1 96,828 - +0.1 96,828 - +0.1 96,828 - +0.2 96,828 - +0.2 96,828 - +0.0 96,828 - +0.6 96,828 - -0.1 96,848 + -0.0 96,848 + +0.0 96,848 + -0.3 96,849 - +0.9 96,860 + +0.3 96,860 + +0.5 96,861 - -0.3 97,011 + GFF2511 0.20 +0.2 97,011 + GFF2511 0.20 -0.4 97,011 + GFF2511 0.20 -1.5 97,012 - GFF2511 0.20 -0.5 97,012 - GFF2511 0.20 -1.1
Or see this region's nucleotide sequence