Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2494

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
78,650	+				-0.1
78,650	-				-0.1
78,671	+				-0.5
78,671	+				-0.1
78,671	+				+0.1
78,671	+				+0.5
78,672	-				-0.4
78,672	-				-0.3
78,672	-				-0.4
78,672	-				-0.2
78,672	-				+0.3
78,672	-				-0.7
79,479	+				+0.1
79,480	-				-0.1
79,480	-				-0.5
79,613	+		GFF2494	0.15	+0.4
79,614	-		GFF2494	0.15	+0.3
79,637	+		GFF2494	0.20	-0.7
79,638	-		GFF2494	0.20	+0.7
79,638	-		GFF2494	0.20	-0.6
79,638	-		GFF2494	0.20	-1.1
79,661	+		GFF2494	0.24	+0.1
79,661	+		GFF2494	0.24	-0.2
79,661	+		GFF2494	0.24	+0.3
79,662	-		GFF2494	0.24	-0.2
79,662	-		GFF2494	0.24	-0.6
79,667	+		GFF2494	0.25	+0.1
79,667	+		GFF2494	0.25	+0.4
79,667	+		GFF2494	0.25	+0.7
79,667	+		GFF2494	0.25	+0.2
79,668	-		GFF2494	0.25	+0.3
79,668	-		GFF2494	0.25	-0.9
79,668	-		GFF2494	0.25	+0.2
79,668	-		GFF2494	0.25	-0.3
79,668	-		GFF2494	0.25	-0.3
79,668	-		GFF2494	0.25	-1.1
79,668	-		GFF2494	0.25	+0.2
79,668	-		GFF2494	0.25	-0.9
79,668	-		GFF2494	0.25	-0.2
79,668	-		GFF2494	0.25	+0.2
79,668	-		GFF2494	0.25	-0.3
79,829	+		GFF2494	0.55	+0.9
79,829	+		GFF2494	0.55	-0.6
79,829	+		GFF2494	0.55	-0.7
79,829	+		GFF2494	0.55	-0.2
79,829	+		GFF2494	0.55	-0.4
79,830	-		GFF2494	0.55	-0.6
79,830	-		GFF2494	0.55	+0.2
79,830	-		GFF2494	0.55	-0.3
79,830	-		GFF2494	0.55	-0.7
79,830	-		GFF2494	0.55	+0.3
79,907	+		GFF2494	0.69	-0.4
79,908	-		GFF2494	0.69	-0.3
79,908	-		GFF2494	0.69	-0.5
79,908	-		GFF2494	0.69	-0.1
79,908	-		GFF2494	0.69	-0.3
79,908	-		GFF2494	0.69	+0.1
79,908	-		GFF2494	0.69	-1.1
79,949	+		GFF2494	0.77	-1.4
79,949	+		GFF2494	0.77	-0.4
79,949	+		GFF2494	0.77	-0.4
79,949	+		GFF2494	0.77	-0.6
79,950	-		GFF2494	0.77	-0.3
79,950	-		GFF2494	0.77	+0.4
79,950	-		GFF2494	0.77	-0.4
80,083	+				+1.3
80,083	+				+0.3
80,083	+				+0.2
80,083	+				+1.2
80,084	-				+0.6
80,084	-				-0.3
80,136	+				-0.7
80,136	+				+0.9
80,137	-				-0.1
80,137	-				-0.8
80,160	+				-0.6
80,160	+				+1.6
80,160	+				-0.4
80,160	+				-0.4
80,161	-				-1.4
80,161	-				+0.2
80,161	-				-1.6
80,161	-				-0.6
80,161	-				-1.4