Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2380

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2379 and GFF2380 are separated by 294 nucleotidesGFF2380 and GFF2381 are separated by 29 nucleotidesGFF2381 and GFF2382 are separated by 41 nucleotides GFF2379 - hypothetical protein, at 21,650 to 22,087 GFF2379 GFF2380 - Alkaline phosphatase (EC 3.1.3.1), at 22,382 to 24,016 GFF2380 GFF2381 - hypothetical protein, at 24,046 to 24,363 GFF2381 GFF2382 - MSHA biogenesis protein MshM, at 24,405 to 25,313 GFF2382 Position (kb) 22 23 24 25Strain fitness (log2 ratio) -2 -1 0 1at 22.042 kb on + strand, within GFF2379at 22.042 kb on + strand, within GFF2379at 22.042 kb on + strand, within GFF2379at 22.042 kb on + strand, within GFF2379at 22.043 kb on - strand, within GFF2379at 22.044 kb on - strandat 22.694 kb on + strand, within GFF2380at 22.694 kb on + strand, within GFF2380at 22.694 kb on + strand, within GFF2380at 22.741 kb on + strand, within GFF2380at 22.742 kb on - strand, within GFF2380at 22.932 kb on - strand, within GFF2380at 22.968 kb on - strand, within GFF2380at 23.039 kb on + strand, within GFF2380at 23.040 kb on - strand, within GFF2380at 23.040 kb on - strand, within GFF2380at 23.132 kb on + strand, within GFF2380at 23.133 kb on - strand, within GFF2380at 23.198 kb on + strand, within GFF2380at 23.198 kb on + strand, within GFF2380at 23.198 kb on + strand, within GFF2380at 23.198 kb on + strand, within GFF2380at 23.199 kb on - strand, within GFF2380at 23.243 kb on - strand, within GFF2380at 23.243 kb on - strand, within GFF2380at 23.243 kb on - strand, within GFF2380at 23.250 kb on + strand, within GFF2380at 23.250 kb on + strand, within GFF2380at 23.251 kb on - strand, within GFF2380at 23.251 kb on - strand, within GFF2380at 23.251 kb on - strand, within GFF2380at 23.295 kb on - strand, within GFF2380at 23.295 kb on - strand, within GFF2380at 23.295 kb on - strand, within GFF2380at 23.299 kb on - strand, within GFF2380at 23.299 kb on - strand, within GFF2380at 23.376 kb on - strand, within GFF2380at 23.403 kb on - strand, within GFF2380at 23.403 kb on - strand, within GFF2380at 23.405 kb on + strand, within GFF2380at 23.405 kb on + strand, within GFF2380at 23.406 kb on - strand, within GFF2380at 23.441 kb on + strand, within GFF2380at 23.441 kb on + strand, within GFF2380at 23.442 kb on - strand, within GFF2380at 23.516 kb on + strand, within GFF2380at 23.580 kb on + strand, within GFF2380at 23.786 kb on + strand, within GFF2380at 23.861 kb on + strandat 23.862 kb on - strandat 23.912 kb on + strandat 23.912 kb on + strandat 23.912 kb on + strandat 23.939 kb on + strandat 23.940 kb on - strandat 24.066 kb on + strandat 24.066 kb on + strandat 24.408 kb on + strandat 24.408 kb on + strandat 24.409 kb on - strandat 24.409 kb on - strandat 24.409 kb on - strandat 24.413 kb on - strandat 24.413 kb on - strandat 24.615 kb on + strand, within GFF2382at 24.627 kb on + strand, within GFF2382at 24.627 kb on + strand, within GFF2382at 24.628 kb on - strand, within GFF2382at 24.642 kb on + strand, within GFF2382at 24.643 kb on - strand, within GFF2382at 24.757 kb on + strand, within GFF2382at 24.757 kb on + strand, within GFF2382at 24.757 kb on + strand, within GFF2382at 24.757 kb on + strand, within GFF2382at 24.959 kb on + strand, within GFF2382at 24.969 kb on + strand, within GFF2382at 25.005 kb on + strand, within GFF2382at 25.006 kb on - strand, within GFF2382at 25.008 kb on + strand, within GFF2382at 25.008 kb on + strand, within GFF2382at 25.008 kb on + strand, within GFF2382at 25.008 kb on + strand, within GFF2382

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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22,042 + GFF2379 0.89 -0.3
22,042 + GFF2379 0.89 -0.2
22,042 + GFF2379 0.89 +0.8
22,042 + GFF2379 0.89 -0.5
22,043 - GFF2379 0.90 -0.2
22,044 - +0.4
22,694 + GFF2380 0.19 +0.6
22,694 + GFF2380 0.19 +0.8
22,694 + GFF2380 0.19 +0.2
22,741 + GFF2380 0.22 -0.4
22,742 - GFF2380 0.22 +0.3
22,932 - GFF2380 0.34 +0.4
22,968 - GFF2380 0.36 +0.8
23,039 + GFF2380 0.40 -0.0
23,040 - GFF2380 0.40 -0.7
23,040 - GFF2380 0.40 -1.2
23,132 + GFF2380 0.46 +0.3
23,133 - GFF2380 0.46 -0.3
23,198 + GFF2380 0.50 +0.6
23,198 + GFF2380 0.50 -1.9
23,198 + GFF2380 0.50 +0.1
23,198 + GFF2380 0.50 -0.5
23,199 - GFF2380 0.50 +0.0
23,243 - GFF2380 0.53 +0.8
23,243 - GFF2380 0.53 +0.2
23,243 - GFF2380 0.53 -0.5
23,250 + GFF2380 0.53 +0.3
23,250 + GFF2380 0.53 -0.2
23,251 - GFF2380 0.53 -0.4
23,251 - GFF2380 0.53 -1.0
23,251 - GFF2380 0.53 +0.1
23,295 - GFF2380 0.56 -1.2
23,295 - GFF2380 0.56 -0.8
23,295 - GFF2380 0.56 -0.4
23,299 - GFF2380 0.56 +0.3
23,299 - GFF2380 0.56 +0.5
23,376 - GFF2380 0.61 +0.4
23,403 - GFF2380 0.62 -1.0
23,403 - GFF2380 0.62 -0.4
23,405 + GFF2380 0.63 -0.6
23,405 + GFF2380 0.63 +0.8
23,406 - GFF2380 0.63 -1.1
23,441 + GFF2380 0.65 -0.4
23,441 + GFF2380 0.65 +0.3
23,442 - GFF2380 0.65 +0.3
23,516 + GFF2380 0.69 +1.3
23,580 + GFF2380 0.73 -0.3
23,786 + GFF2380 0.86 +0.1
23,861 + +0.0
23,862 - +0.2
23,912 + -0.3
23,912 + -0.7
23,912 + -0.3
23,939 + +0.0
23,940 - +0.2
24,066 + +0.8
24,066 + -0.2
24,408 + -0.6
24,408 + -0.1
24,409 - -0.6
24,409 - -0.1
24,409 - -0.2
24,413 - +0.8
24,413 - -0.2
24,615 + GFF2382 0.23 +0.2
24,627 + GFF2382 0.24 -1.0
24,627 + GFF2382 0.24 -1.0
24,628 - GFF2382 0.25 +0.8
24,642 + GFF2382 0.26 -0.2
24,643 - GFF2382 0.26 -0.1
24,757 + GFF2382 0.39 +1.4
24,757 + GFF2382 0.39 -0.3
24,757 + GFF2382 0.39 -0.2
24,757 + GFF2382 0.39 +0.4
24,959 + GFF2382 0.61 +0.0
24,969 + GFF2382 0.62 -0.3
25,005 + GFF2382 0.66 -0.1
25,006 - GFF2382 0.66 -0.9
25,008 + GFF2382 0.66 +0.8
25,008 + GFF2382 0.66 -0.1
25,008 + GFF2382 0.66 -0.0
25,008 + GFF2382 0.66 -0.4

Or see this region's nucleotide sequence