Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2356 and GFF2357 are separated by 751 nucleotides GFF2357 and GFF2358 are separated by 36 nucleotides
GFF2356 - Mobile element protein, at 430 to 636
GFF2356
GFF2357 - hypothetical protein, at 1,388 to 1,504
GFF2357
GFF2358 - Glyoxalase family protein, at 1,541 to 1,825
GFF2358
Position (kb) 0
1 Strain fitness (log2 ratio) -1
0
1
2
3 at 0.163 kb on + strand at 0.163 kb on + strand at 0.163 kb on + strand at 0.163 kb on + strand at 0.164 kb on - strand at 0.164 kb on - strand at 0.164 kb on - strand at 0.164 kb on - strand at 0.164 kb on - strand at 0.568 kb on + strand, within GFF2356 at 0.568 kb on + strand, within GFF2356 at 0.569 kb on - strand, within GFF2356 at 0.589 kb on + strand, within GFF2356 at 0.589 kb on + strand, within GFF2356 at 0.589 kb on + strand, within GFF2356 at 0.589 kb on + strand, within GFF2356 at 0.589 kb on + strand, within GFF2356 at 0.589 kb on + strand, within GFF2356 at 0.589 kb on + strand, within GFF2356 at 0.590 kb on - strand, within GFF2356 at 0.590 kb on - strand, within GFF2356 at 0.590 kb on - strand, within GFF2356 at 0.595 kb on + strand, within GFF2356 at 0.595 kb on + strand, within GFF2356 at 0.595 kb on + strand, within GFF2356 at 0.595 kb on + strand, within GFF2356 at 0.596 kb on - strand, within GFF2356 at 0.596 kb on - strand, within GFF2356 at 0.629 kb on + strand at 0.750 kb on + strand at 0.751 kb on - strand at 0.759 kb on + strand at 0.760 kb on - strand at 0.790 kb on - strand at 0.790 kb on - strand at 0.801 kb on + strand at 0.801 kb on + strand at 0.801 kb on + strand at 0.801 kb on + strand at 0.801 kb on + strand at 0.802 kb on - strand at 0.931 kb on + strand at 0.931 kb on + strand at 0.932 kb on - strand at 1.217 kb on + strand at 1.390 kb on - strand at 1.516 kb on + strand at 1.517 kb on + strand at 1.517 kb on - strand at 1.517 kb on - strand at 1.551 kb on + strand at 1.552 kb on - strand at 1.561 kb on + strand at 1.561 kb on + strand at 1.561 kb on + strand at 1.562 kb on - strand at 1.562 kb on - strand at 1.562 kb on - strand at 1.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 163 + +0.7 163 + -0.5 163 + -0.1 163 + +1.0 164 - +0.1 164 - +0.2 164 - -0.2 164 - +0.5 164 - -1.2 568 + GFF2356 0.67 -0.3 568 + GFF2356 0.67 -0.1 569 - GFF2356 0.67 +1.3 589 + GFF2356 0.77 -0.7 589 + GFF2356 0.77 -0.3 589 + GFF2356 0.77 -0.6 589 + GFF2356 0.77 -0.1 589 + GFF2356 0.77 +0.5 589 + GFF2356 0.77 -0.7 589 + GFF2356 0.77 +0.1 590 - GFF2356 0.77 +1.2 590 - GFF2356 0.77 -0.3 590 - GFF2356 0.77 -0.2 595 + GFF2356 0.80 -0.2 595 + GFF2356 0.80 -0.8 595 + GFF2356 0.80 -0.2 595 + GFF2356 0.80 +0.4 596 - GFF2356 0.80 -0.5 596 - GFF2356 0.80 +0.5 629 + -0.2 750 + -0.0 751 - +0.4 759 + -0.3 760 - -0.2 790 - +0.2 790 - +1.0 801 + -0.6 801 + -0.0 801 + +2.8 801 + -1.2 801 + -0.2 802 - +0.4 931 + -0.1 931 + -0.3 932 - -0.0 1,217 + -0.7 1,390 - -0.0 1,516 + -1.0 1,517 + +0.2 1,517 - +0.4 1,517 - +0.1 1,551 + +0.2 1,552 - -0.6 1,561 + +0.6 1,561 + +1.4 1,561 + -0.1 1,562 - -0.4 1,562 - +0.2 1,562 - +0.0 1,562 - +0.7
Or see this region's nucleotide sequence