Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF232 and GFF233 overlap by 1 nucleotides GFF233 and GFF234 are separated by 90 nucleotides GFF234 and GFF235 are separated by 43 nucleotides GFF235 and GFF236 are separated by 44 nucleotides
GFF232 - Transcription regulator [contains diacylglycerol kinase catalytic domain], at 253,425 to 254,396
GFF232
GFF233 - hypothetical protein, at 254,396 to 254,944
GFF233
GFF234 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 255,035 to 256,204
GFF234
GFF235 - Putative RNA polymerase sigma factor, at 256,248 to 257,153
GFF235
GFF236 - Alkylhydroperoxidase AhpD core, at 257,198 to 257,656
GFF236
Position (kb) 255
256
257 Strain fitness (log2 ratio) -1
0
1 at 254.083 kb on + strand, within GFF232 at 254.083 kb on + strand, within GFF232 at 254.084 kb on - strand, within GFF232 at 254.448 kb on + strand at 254.796 kb on + strand, within GFF233 at 254.985 kb on + strand at 254.985 kb on + strand at 254.986 kb on - strand at 255.410 kb on + strand, within GFF234 at 255.410 kb on + strand, within GFF234 at 255.581 kb on + strand, within GFF234 at 255.707 kb on + strand, within GFF234 at 255.708 kb on - strand, within GFF234 at 255.719 kb on + strand, within GFF234 at 255.720 kb on - strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.881 kb on + strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 255.882 kb on - strand, within GFF234 at 256.202 kb on + strand at 256.202 kb on + strand at 256.203 kb on - strand at 256.203 kb on - strand at 256.240 kb on - strand at 256.240 kb on - strand at 256.305 kb on + strand at 256.477 kb on - strand, within GFF235 at 256.477 kb on - strand, within GFF235
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 254,083 + GFF232 0.68 +0.0 254,083 + GFF232 0.68 -0.6 254,084 - GFF232 0.68 -1.6 254,448 + -0.8 254,796 + GFF233 0.73 -0.4 254,985 + +0.2 254,985 + +0.3 254,986 - -0.3 255,410 + GFF234 0.32 -0.6 255,410 + GFF234 0.32 +0.0 255,581 + GFF234 0.47 -0.1 255,707 + GFF234 0.57 +0.0 255,708 - GFF234 0.58 -0.9 255,719 + GFF234 0.58 +0.7 255,720 - GFF234 0.59 -0.2 255,881 + GFF234 0.72 -0.0 255,881 + GFF234 0.72 +0.2 255,881 + GFF234 0.72 -0.3 255,881 + GFF234 0.72 -0.8 255,881 + GFF234 0.72 +0.9 255,882 - GFF234 0.72 -0.1 255,882 - GFF234 0.72 +0.9 255,882 - GFF234 0.72 -0.6 255,882 - GFF234 0.72 -0.3 256,202 + +1.3 256,202 + -0.6 256,203 - -0.1 256,203 - +0.3 256,240 - -1.3 256,240 - -0.5 256,305 + +0.1 256,477 - GFF235 0.25 -1.6 256,477 - GFF235 0.25 +0.8
Or see this region's nucleotide sequence