Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2057 and GFF2058 are separated by 3 nucleotides GFF2058 and GFF2059 are separated by 480 nucleotides GFF2059 and GFF2060 are separated by 56 nucleotides
GFF2057 - Septum site-determining protein MinD, at 939,526 to 940,341
GFF2057
GFF2058 - Cell division topological specificity factor MinE, at 940,345 to 940,605
GFF2058
GFF2059 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 941,086 to 941,868
GFF2059
GFF2060 - TRAP transporter solute receptor, unknown substrate 6, at 941,925 to 943,019
GFF2060
Position (kb) 941
942 Strain fitness (log2 ratio) -2
-1
0
1
2 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.240 kb on + strand, within GFF2057 at 940.241 kb on - strand, within GFF2057 at 940.241 kb on - strand, within GFF2057 at 940.713 kb on + strand at 940.713 kb on + strand at 940.713 kb on + strand at 940.713 kb on + strand at 940.713 kb on + strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.714 kb on - strand at 940.829 kb on + strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.830 kb on - strand at 940.989 kb on + strand at 940.990 kb on - strand at 940.990 kb on - strand at 940.990 kb on - strand at 941.014 kb on + strand at 941.014 kb on + strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.015 kb on - strand at 941.165 kb on - strand, within GFF2059 at 941.311 kb on + strand, within GFF2059 at 941.311 kb on + strand, within GFF2059 at 941.312 kb on - strand, within GFF2059 at 941.707 kb on + strand, within GFF2059 at 941.707 kb on + strand, within GFF2059 at 941.708 kb on - strand, within GFF2059 at 941.708 kb on - strand, within GFF2059 at 941.708 kb on - strand, within GFF2059 at 941.718 kb on + strand, within GFF2059 at 941.718 kb on + strand, within GFF2059 at 941.719 kb on - strand, within GFF2059 at 941.816 kb on - strand at 941.934 kb on - strand at 941.934 kb on - strand at 942.039 kb on + strand, within GFF2060 at 942.064 kb on - strand, within GFF2060 at 942.222 kb on + strand, within GFF2060 at 942.222 kb on + strand, within GFF2060 at 942.223 kb on - strand, within GFF2060 at 942.226 kb on - strand, within GFF2060 at 942.226 kb on - strand, within GFF2060 at 942.303 kb on + strand, within GFF2060 at 942.348 kb on + strand, within GFF2060 at 942.348 kb on + strand, within GFF2060 at 942.349 kb on - strand, within GFF2060 at 942.361 kb on - strand, within GFF2060 at 942.565 kb on - strand, within GFF2060 at 942.615 kb on + strand, within GFF2060 at 942.615 kb on + strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.616 kb on - strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.618 kb on + strand, within GFF2060 at 942.619 kb on - strand, within GFF2060 at 942.619 kb on - strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.621 kb on + strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.622 kb on - strand, within GFF2060 at 942.624 kb on + strand, within GFF2060 at 942.759 kb on + strand, within GFF2060 at 942.759 kb on + strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.760 kb on - strand, within GFF2060 at 942.849 kb on + strand, within GFF2060 at 942.849 kb on + strand, within GFF2060
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 940,240 + GFF2057 0.88 +1.4 940,240 + GFF2057 0.88 -0.5 940,240 + GFF2057 0.88 -0.1 940,240 + GFF2057 0.88 -0.6 940,240 + GFF2057 0.88 +0.0 940,240 + GFF2057 0.88 -0.6 940,241 - GFF2057 0.88 +0.6 940,241 - GFF2057 0.88 -0.0 940,713 + +0.6 940,713 + +0.4 940,713 + -0.2 940,713 + +0.4 940,713 + +0.4 940,714 - -0.4 940,714 - -0.0 940,714 - +0.1 940,714 - -0.4 940,714 - -0.2 940,714 - +1.3 940,829 + -0.5 940,830 - -0.3 940,830 - -0.8 940,830 - +0.0 940,830 - -0.4 940,830 - -0.5 940,830 - -0.6 940,989 + -0.5 940,990 - -0.3 940,990 - -0.0 940,990 - -0.6 941,014 + -0.6 941,014 + -0.5 941,015 - -0.3 941,015 - -0.4 941,015 - +0.7 941,015 - +0.2 941,015 - +0.8 941,165 - GFF2059 0.10 +0.5 941,311 + GFF2059 0.29 -0.8 941,311 + GFF2059 0.29 +0.7 941,312 - GFF2059 0.29 +1.5 941,707 + GFF2059 0.79 -0.4 941,707 + GFF2059 0.79 -1.0 941,708 - GFF2059 0.79 -0.7 941,708 - GFF2059 0.79 +1.0 941,708 - GFF2059 0.79 +0.8 941,718 + GFF2059 0.81 -0.1 941,718 + GFF2059 0.81 +0.6 941,719 - GFF2059 0.81 +0.1 941,816 - +0.6 941,934 - -0.6 941,934 - +0.3 942,039 + GFF2060 0.10 +1.8 942,064 - GFF2060 0.13 +1.5 942,222 + GFF2060 0.27 +0.2 942,222 + GFF2060 0.27 -1.0 942,223 - GFF2060 0.27 +0.3 942,226 - GFF2060 0.27 -0.1 942,226 - GFF2060 0.27 +0.3 942,303 + GFF2060 0.35 -0.3 942,348 + GFF2060 0.39 -0.0 942,348 + GFF2060 0.39 -0.1 942,349 - GFF2060 0.39 +0.2 942,361 - GFF2060 0.40 -0.7 942,565 - GFF2060 0.58 +1.0 942,615 + GFF2060 0.63 +0.5 942,615 + GFF2060 0.63 -0.3 942,616 - GFF2060 0.63 -0.1 942,616 - GFF2060 0.63 -0.0 942,616 - GFF2060 0.63 +0.3 942,616 - GFF2060 0.63 +0.5 942,618 + GFF2060 0.63 -0.2 942,618 + GFF2060 0.63 -0.4 942,618 + GFF2060 0.63 +0.1 942,619 - GFF2060 0.63 -0.2 942,619 - GFF2060 0.63 -0.4 942,621 + GFF2060 0.64 +0.0 942,621 + GFF2060 0.64 +0.3 942,621 + GFF2060 0.64 +0.4 942,621 + GFF2060 0.64 +0.2 942,621 + GFF2060 0.64 -0.0 942,621 + GFF2060 0.64 +0.0 942,621 + GFF2060 0.64 +0.3 942,622 - GFF2060 0.64 -0.7 942,622 - GFF2060 0.64 +0.1 942,622 - GFF2060 0.64 +1.2 942,622 - GFF2060 0.64 +0.4 942,624 + GFF2060 0.64 -0.6 942,759 + GFF2060 0.76 +0.4 942,759 + GFF2060 0.76 -1.8 942,760 - GFF2060 0.76 -0.0 942,760 - GFF2060 0.76 +0.2 942,760 - GFF2060 0.76 -0.4 942,760 - GFF2060 0.76 -1.0 942,760 - GFF2060 0.76 -0.6 942,849 + GFF2060 0.84 -0.1 942,849 + GFF2060 0.84 +0.0
Or see this region's nucleotide sequence