Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2044 and GFF2045 are separated by 159 nucleotides GFF2045 and GFF2046 overlap by 4 nucleotides GFF2046 and GFF2047 are separated by 76 nucleotides
GFF2044 - Agmatinase (EC 3.5.3.11), at 924,266 to 925,198
GFF2044
GFF2045 - two-component response regulator, at 925,358 to 926,038
GFF2045
GFF2046 - Two-component hybrid sensor and regulator, at 926,035 to 927,804
GFF2046
GFF2047 - hypothetical protein, at 927,881 to 930,343
GFF2047
Position (kb) 926
927
928 Strain fitness (log2 ratio) -2
-1
0
1
2 at 925.176 kb on + strand at 925.233 kb on + strand at 925.233 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.344 kb on + strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.345 kb on - strand at 925.547 kb on + strand, within GFF2045 at 925.547 kb on + strand, within GFF2045 at 925.548 kb on - strand, within GFF2045 at 925.728 kb on - strand, within GFF2045 at 925.766 kb on + strand, within GFF2045 at 926.101 kb on + strand at 926.101 kb on + strand at 926.101 kb on + strand at 926.102 kb on - strand at 926.320 kb on + strand, within GFF2046 at 926.320 kb on + strand, within GFF2046 at 926.323 kb on + strand, within GFF2046 at 926.323 kb on + strand, within GFF2046 at 926.324 kb on - strand, within GFF2046 at 926.324 kb on - strand, within GFF2046 at 926.324 kb on - strand, within GFF2046 at 926.557 kb on + strand, within GFF2046 at 926.558 kb on - strand, within GFF2046 at 927.076 kb on + strand, within GFF2046 at 927.076 kb on + strand, within GFF2046 at 927.076 kb on + strand, within GFF2046 at 927.077 kb on - strand, within GFF2046 at 927.077 kb on - strand, within GFF2046 at 927.199 kb on + strand, within GFF2046 at 927.376 kb on + strand, within GFF2046 at 927.839 kb on - strand at 928.172 kb on + strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.484 kb on + strand, within GFF2047 at 928.484 kb on + strand, within GFF2047 at 928.484 kb on + strand, within GFF2047 at 928.485 kb on - strand, within GFF2047 at 928.547 kb on + strand, within GFF2047 at 928.547 kb on + strand, within GFF2047 at 928.548 kb on - strand, within GFF2047 at 928.634 kb on + strand, within GFF2047 at 928.634 kb on + strand, within GFF2047 at 928.635 kb on - strand, within GFF2047 at 928.758 kb on - strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.797 kb on - strand, within GFF2047 at 928.799 kb on + strand, within GFF2047 at 928.800 kb on - strand, within GFF2047 at 928.800 kb on - strand, within GFF2047
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 925,176 + -1.6 925,233 + -0.4 925,233 + -0.2 925,344 + +0.9 925,344 + -0.0 925,344 + +0.3 925,344 + +0.2 925,345 - +0.1 925,345 - +0.6 925,345 - -0.1 925,345 - +0.5 925,345 - +0.2 925,345 - -0.0 925,547 + GFF2045 0.28 -1.3 925,547 + GFF2045 0.28 +0.2 925,548 - GFF2045 0.28 +0.2 925,728 - GFF2045 0.54 +0.1 925,766 + GFF2045 0.60 -0.0 926,101 + +2.1 926,101 + -0.1 926,101 + +0.6 926,102 - -0.9 926,320 + GFF2046 0.16 -1.2 926,320 + GFF2046 0.16 +0.4 926,323 + GFF2046 0.16 -1.6 926,323 + GFF2046 0.16 +0.1 926,324 - GFF2046 0.16 +1.1 926,324 - GFF2046 0.16 -0.4 926,324 - GFF2046 0.16 -0.2 926,557 + GFF2046 0.29 -0.1 926,558 - GFF2046 0.30 -0.0 927,076 + GFF2046 0.59 +1.3 927,076 + GFF2046 0.59 -0.0 927,076 + GFF2046 0.59 -0.5 927,077 - GFF2046 0.59 -0.6 927,077 - GFF2046 0.59 -0.1 927,199 + GFF2046 0.66 +0.7 927,376 + GFF2046 0.76 -0.6 927,839 - +0.6 928,172 + GFF2047 0.12 +1.0 928,173 - GFF2047 0.12 -1.4 928,173 - GFF2047 0.12 -0.6 928,173 - GFF2047 0.12 -0.8 928,173 - GFF2047 0.12 -1.0 928,484 + GFF2047 0.24 +2.0 928,484 + GFF2047 0.24 -0.0 928,484 + GFF2047 0.24 +0.8 928,485 - GFF2047 0.25 -1.0 928,547 + GFF2047 0.27 +0.1 928,547 + GFF2047 0.27 +0.4 928,548 - GFF2047 0.27 -1.3 928,634 + GFF2047 0.31 -0.2 928,634 + GFF2047 0.31 +0.2 928,635 - GFF2047 0.31 +0.2 928,758 - GFF2047 0.36 -0.5 928,796 + GFF2047 0.37 -0.4 928,796 + GFF2047 0.37 -2.4 928,796 + GFF2047 0.37 +1.0 928,796 + GFF2047 0.37 -0.2 928,797 - GFF2047 0.37 +0.8 928,799 + GFF2047 0.37 +0.4 928,800 - GFF2047 0.37 +0.5 928,800 - GFF2047 0.37 -0.6
Or see this region's nucleotide sequence