Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2031

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2030 and GFF2031 are separated by 39 nucleotides GFF2030 - Aldehyde dehydrogenase (EC 1.2.1.3), at 909,375 to 910,844 GFF2030 GFF2031 - hypothetical protein, at 910,884 to 911,018 GFF2031 Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1 2at 909.895 kb on + strand, within GFF2030at 909.896 kb on - strand, within GFF2030at 909.896 kb on - strand, within GFF2030at 910.174 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.375 kb on + strand, within GFF2030at 910.376 kb on - strand, within GFF2030at 910.376 kb on - strand, within GFF2030at 910.376 kb on - strand, within GFF2030at 910.376 kb on - strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.465 kb on + strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.466 kb on - strand, within GFF2030at 910.489 kb on + strand, within GFF2030at 910.489 kb on + strand, within GFF2030at 910.538 kb on - strand, within GFF2030at 910.538 kb on - strand, within GFF2030at 910.538 kb on - strand, within GFF2030at 910.888 kb on + strandat 910.888 kb on + strandat 910.888 kb on + strandat 910.888 kb on + strandat 910.889 kb on - strandat 910.889 kb on - strandat 910.889 kb on - strandat 910.889 kb on - strandat 910.889 kb on - strandat 910.889 kb on - strandat 910.889 kb on - strandat 910.889 kb on - strandat 910.976 kb on + strand, within GFF2031at 910.976 kb on + strand, within GFF2031at 910.976 kb on + strand, within GFF2031at 910.976 kb on + strand, within GFF2031at 910.976 kb on - strand, within GFF2031at 910.977 kb on - strand, within GFF2031at 910.977 kb on - strand, within GFF2031at 910.978 kb on - strand, within GFF2031at 911.004 kb on + strand, within GFF2031at 911.005 kb on - strandat 911.005 kb on - strandat 911.005 kb on - strandat 911.102 kb on - strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.135 kb on + strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.136 kb on - strandat 911.150 kb on + strandat 911.150 kb on + strandat 911.151 kb on - strandat 911.151 kb on - strandat 911.151 kb on - strandat 911.151 kb on - strandat 911.217 kb on + strandat 911.217 kb on + strandat 911.218 kb on - strandat 911.314 kb on + strandat 911.314 kb on + strandat 911.371 kb on + strandat 911.371 kb on + strandat 911.372 kb on - strandat 911.372 kb on - strandat 911.372 kb on - strandat 911.394 kb on + strandat 911.394 kb on + strandat 911.410 kb on + strandat 911.410 kb on + strandat 911.423 kb on + strandat 911.423 kb on + strandat 911.423 kb on + strandat 911.423 kb on + strandat 911.423 kb on + strandat 911.423 kb on + strandat 911.424 kb on - strandat 911.424 kb on - strandat 911.424 kb on - strandat 911.424 kb on - strandat 911.424 kb on - strandat 911.424 kb on - strandat 911.522 kb on + strandat 911.522 kb on + strandat 911.523 kb on - strandat 911.585 kb on - strandat 911.628 kb on + strandat 911.629 kb on - strandat 911.629 kb on - strandat 911.629 kb on - strandat 911.629 kb on - strandat 911.629 kb on - strandat 911.671 kb on + strandat 911.671 kb on + strandat 911.671 kb on + strandat 911.672 kb on - strandat 911.672 kb on - strandat 911.672 kb on - strandat 911.678 kb on - strandat 911.678 kb on - strandat 911.700 kb on + strandat 911.724 kb on + strandat 911.724 kb on + strandat 911.725 kb on - strandat 911.725 kb on - strandat 911.754 kb on + strandat 911.755 kb on - strandat 911.755 kb on - strandat 911.755 kb on - strandat 911.761 kb on - strandat 911.761 kb on - strandat 911.776 kb on + strandat 911.776 kb on + strandat 911.776 kb on + strandat 911.776 kb on + strandat 911.776 kb on + strandat 911.777 kb on - strandat 911.777 kb on - strandat 911.777 kb on - strandat 911.800 kb on + strandat 911.800 kb on + strandat 911.800 kb on + strandat 911.800 kb on + strandat 911.801 kb on - strandat 911.801 kb on - strandat 911.801 kb on - strandat 911.845 kb on + strandat 911.846 kb on - strandat 911.862 kb on + strandat 911.953 kb on + strandat 911.954 kb on - strandat 911.954 kb on - strandat 911.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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909,895 + GFF2030 0.35 -0.8
909,896 - GFF2030 0.35 -0.4
909,896 - GFF2030 0.35 -1.2
910,174 + GFF2030 0.54 -1.3
910,375 + GFF2030 0.68 -1.0
910,375 + GFF2030 0.68 -1.3
910,375 + GFF2030 0.68 -1.4
910,375 + GFF2030 0.68 -1.0
910,375 + GFF2030 0.68 +0.0
910,375 + GFF2030 0.68 -0.3
910,375 + GFF2030 0.68 -1.2
910,375 + GFF2030 0.68 +0.1
910,376 - GFF2030 0.68 -0.2
910,376 - GFF2030 0.68 -0.7
910,376 - GFF2030 0.68 -1.1
910,376 - GFF2030 0.68 -1.1
910,465 + GFF2030 0.74 -1.1
910,465 + GFF2030 0.74 -1.2
910,465 + GFF2030 0.74 -0.9
910,465 + GFF2030 0.74 -0.6
910,465 + GFF2030 0.74 -1.4
910,465 + GFF2030 0.74 -0.6
910,465 + GFF2030 0.74 -0.0
910,465 + GFF2030 0.74 -1.2
910,466 - GFF2030 0.74 -0.9
910,466 - GFF2030 0.74 -0.1
910,466 - GFF2030 0.74 -0.6
910,466 - GFF2030 0.74 -1.1
910,466 - GFF2030 0.74 -0.8
910,466 - GFF2030 0.74 -0.4
910,466 - GFF2030 0.74 -0.7
910,466 - GFF2030 0.74 -1.3
910,466 - GFF2030 0.74 -1.2
910,489 + GFF2030 0.76 +0.8
910,489 + GFF2030 0.76 -0.4
910,538 - GFF2030 0.79 -0.8
910,538 - GFF2030 0.79 -0.7
910,538 - GFF2030 0.79 -0.6
910,888 + -1.4
910,888 + -0.7
910,888 + +0.6
910,888 + -0.8
910,889 - -0.4
910,889 - +1.2
910,889 - +0.0
910,889 - -0.1
910,889 - +0.0
910,889 - -0.0
910,889 - +0.1
910,889 - -0.2
910,976 + GFF2031 0.68 +0.6
910,976 + GFF2031 0.68 +0.0
910,976 + GFF2031 0.68 +0.6
910,976 + GFF2031 0.68 +0.2
910,976 - GFF2031 0.68 +0.3
910,977 - GFF2031 0.69 +0.1
910,977 - GFF2031 0.69 +2.0
910,978 - GFF2031 0.70 +2.0
911,004 + GFF2031 0.89 +1.7
911,005 - -0.3
911,005 - -0.4
911,005 - -0.4
911,102 - -0.0
911,135 + +1.6
911,135 + +0.0
911,135 + +0.6
911,135 + +0.2
911,135 + -0.2
911,135 + +0.1
911,135 + +0.4
911,135 + +0.1
911,135 + -0.5
911,135 + -0.5
911,135 + +0.3
911,136 - -0.8
911,136 - +0.2
911,136 - -0.1
911,136 - +1.1
911,136 - -0.0
911,136 - +1.0
911,136 - -0.3
911,136 - -0.2
911,136 - +0.0
911,136 - -1.6
911,136 - +0.2
911,136 - +0.3
911,136 - -1.6
911,136 - -0.4
911,136 - +0.2
911,150 + +0.3
911,150 + +0.2
911,151 - -0.3
911,151 - +0.5
911,151 - -0.3
911,151 - -1.4
911,217 + +0.2
911,217 + -1.4
911,218 - +0.9
911,314 + +0.1
911,314 + -0.1
911,371 + +0.4
911,371 + -1.2
911,372 - -1.1
911,372 - +0.3
911,372 - -1.0
911,394 + +1.1
911,394 + -0.4
911,410 + +0.1
911,410 + -0.6
911,423 + +1.3
911,423 + -0.2
911,423 + +0.1
911,423 + -1.4
911,423 + -0.7
911,423 + +0.1
911,424 - -0.5
911,424 - +0.3
911,424 - +0.7
911,424 - +0.5
911,424 - +0.0
911,424 - +0.3
911,522 + +0.5
911,522 + -0.4
911,523 - +0.1
911,585 - +1.2
911,628 + +0.3
911,629 - +0.6
911,629 - -0.3
911,629 - -0.4
911,629 - -2.7
911,629 - -0.6
911,671 + -0.2
911,671 + +0.2
911,671 + -0.1
911,672 - -0.4
911,672 - +0.0
911,672 - +0.3
911,678 - +0.2
911,678 - +0.4
911,700 + +0.8
911,724 + -0.8
911,724 + +1.1
911,725 - +0.1
911,725 - +0.8
911,754 + +0.4
911,755 - -0.8
911,755 - -0.8
911,755 - +0.3
911,761 - +0.2
911,761 - +1.0
911,776 + +0.1
911,776 + +0.0
911,776 + -0.6
911,776 + -1.0
911,776 + -0.8
911,777 - -0.4
911,777 - +0.7
911,777 - -0.4
911,800 + -0.3
911,800 + -0.7
911,800 + -0.1
911,800 + -0.3
911,801 - -0.4
911,801 - -0.2
911,801 - -0.0
911,845 + -0.7
911,846 - +0.6
911,862 + -0.1
911,953 + -0.4
911,954 - +0.6
911,954 - -0.6
911,954 - -1.5

Or see this region's nucleotide sequence