Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1971

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1969 and GFF1970 are separated by 70 nucleotidesGFF1970 and GFF1971 are separated by 69 nucleotidesGFF1971 and GFF1972 are separated by 154 nucleotides GFF1969 - Ser/Thr protein phosphatase family protein, at 843,035 to 843,829 GFF1969 GFF1970 - Universal stress family protein, at 843,900 to 844,322 GFF1970 GFF1971 - Transcriptional regulator, TetR family, at 844,392 to 844,976 GFF1971 GFF1972 - Transcriptional regulator, at 845,131 to 846,060 GFF1972 Position (kb) 844 845Strain fitness (log2 ratio) -2 -1 0 1 2 3at 843.413 kb on + strand, within GFF1969at 843.414 kb on - strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.431 kb on + strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.432 kb on - strand, within GFF1969at 843.749 kb on + strand, within GFF1969at 843.749 kb on + strand, within GFF1969at 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.861 kb on + strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.862 kb on - strandat 843.863 kb on - strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.883 kb on + strandat 843.884 kb on - strandat 843.884 kb on - strandat 843.884 kb on - strandat 843.884 kb on - strandat 843.933 kb on + strandat 843.933 kb on + strandat 843.934 kb on - strandat 843.934 kb on - strandat 843.934 kb on - strandat 843.934 kb on - strandat 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.954 kb on + strand, within GFF1970at 843.955 kb on - strand, within GFF1970at 843.955 kb on - strand, within GFF1970at 844.071 kb on + strand, within GFF1970at 844.071 kb on + strand, within GFF1970at 844.072 kb on - strand, within GFF1970at 844.072 kb on - strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.074 kb on + strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.075 kb on - strand, within GFF1970at 844.456 kb on + strand, within GFF1971at 844.507 kb on + strand, within GFF1971at 844.508 kb on - strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.516 kb on + strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.517 kb on - strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.621 kb on + strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.622 kb on - strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.852 kb on + strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 844.853 kb on - strand, within GFF1971at 845.042 kb on + strandat 845.043 kb on - strandat 845.043 kb on - strandat 845.043 kb on - strandat 845.525 kb on + strand, within GFF1972at 845.525 kb on + strand, within GFF1972at 845.526 kb on - strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.549 kb on + strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972at 845.550 kb on - strand, within GFF1972

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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843,413 + GFF1969 0.48 +0.2
843,414 - GFF1969 0.48 -1.0
843,431 + GFF1969 0.50 -0.3
843,431 + GFF1969 0.50 +0.6
843,431 + GFF1969 0.50 -0.0
843,431 + GFF1969 0.50 -0.3
843,432 - GFF1969 0.50 +0.8
843,432 - GFF1969 0.50 +0.6
843,432 - GFF1969 0.50 -0.2
843,432 - GFF1969 0.50 +0.9
843,749 + GFF1969 0.90 -1.0
843,749 + GFF1969 0.90 +1.6
843,861 + +0.1
843,861 + +0.5
843,861 + -1.0
843,861 + -0.0
843,861 + -0.2
843,861 + +0.5
843,861 + -0.1
843,861 + -0.6
843,861 + -0.8
843,861 + -1.5
843,861 + -0.4
843,861 + -0.2
843,861 + -2.0
843,861 + +1.0
843,861 + +0.3
843,861 + +0.6
843,861 + -1.0
843,861 + +1.4
843,862 - -0.1
843,862 - -0.0
843,862 - -0.3
843,862 - -0.3
843,862 - +0.8
843,862 - -0.1
843,862 - +0.6
843,862 - -0.3
843,862 - -0.1
843,862 - -0.2
843,862 - +0.4
843,862 - +0.2
843,862 - -0.3
843,862 - -0.1
843,862 - -1.6
843,862 - +1.5
843,862 - -0.7
843,862 - +1.0
843,862 - +0.6
843,862 - -0.5
843,862 - -0.2
843,862 - -0.2
843,863 - -0.0
843,883 + +1.2
843,883 + -1.0
843,883 + -1.3
843,883 + -0.0
843,883 + -0.7
843,883 + -0.4
843,883 + +0.2
843,883 + +0.6
843,883 + -0.5
843,883 + +0.2
843,884 - -0.1
843,884 - +0.1
843,884 - +0.1
843,884 - -0.4
843,933 + +0.0
843,933 + -0.0
843,934 - +1.0
843,934 - +0.2
843,934 - -0.6
843,934 - +0.0
843,954 + GFF1970 0.13 -0.0
843,954 + GFF1970 0.13 +0.2
843,954 + GFF1970 0.13 -0.6
843,954 + GFF1970 0.13 +0.1
843,954 + GFF1970 0.13 -1.3
843,954 + GFF1970 0.13 -0.3
843,955 - GFF1970 0.13 -0.2
843,955 - GFF1970 0.13 +0.8
844,071 + GFF1970 0.40 +0.8
844,071 + GFF1970 0.40 +1.3
844,072 - GFF1970 0.41 +0.3
844,072 - GFF1970 0.41 +1.4
844,074 + GFF1970 0.41 -0.8
844,074 + GFF1970 0.41 -0.6
844,074 + GFF1970 0.41 +1.0
844,074 + GFF1970 0.41 +1.2
844,075 - GFF1970 0.41 -0.5
844,075 - GFF1970 0.41 +0.3
844,075 - GFF1970 0.41 -0.1
844,075 - GFF1970 0.41 -0.1
844,075 - GFF1970 0.41 +0.1
844,075 - GFF1970 0.41 -0.2
844,075 - GFF1970 0.41 +0.3
844,075 - GFF1970 0.41 -0.0
844,456 + GFF1971 0.11 +1.0
844,507 + GFF1971 0.20 +1.6
844,508 - GFF1971 0.20 +1.5
844,516 + GFF1971 0.21 +2.0
844,516 + GFF1971 0.21 +1.0
844,517 - GFF1971 0.21 +1.2
844,517 - GFF1971 0.21 +1.8
844,517 - GFF1971 0.21 +1.1
844,517 - GFF1971 0.21 +0.2
844,621 + GFF1971 0.39 +1.2
844,621 + GFF1971 0.39 +0.9
844,621 + GFF1971 0.39 +0.8
844,621 + GFF1971 0.39 +2.1
844,621 + GFF1971 0.39 +3.7
844,621 + GFF1971 0.39 +1.0
844,621 + GFF1971 0.39 +1.3
844,621 + GFF1971 0.39 +2.2
844,622 - GFF1971 0.39 +1.5
844,622 - GFF1971 0.39 +1.6
844,622 - GFF1971 0.39 +1.3
844,622 - GFF1971 0.39 +1.6
844,622 - GFF1971 0.39 +1.2
844,852 + GFF1971 0.79 +0.5
844,852 + GFF1971 0.79 +1.1
844,852 + GFF1971 0.79 +0.3
844,852 + GFF1971 0.79 +1.0
844,852 + GFF1971 0.79 +0.9
844,852 + GFF1971 0.79 +1.7
844,852 + GFF1971 0.79 +2.6
844,852 + GFF1971 0.79 +0.8
844,853 - GFF1971 0.79 +0.6
844,853 - GFF1971 0.79 +0.2
844,853 - GFF1971 0.79 +1.2
844,853 - GFF1971 0.79 +2.2
844,853 - GFF1971 0.79 +1.0
844,853 - GFF1971 0.79 +1.0
844,853 - GFF1971 0.79 +0.9
845,042 + +1.1
845,043 - +0.7
845,043 - +0.5
845,043 - +2.6
845,525 + GFF1972 0.42 +1.3
845,525 + GFF1972 0.42 +1.6
845,526 - GFF1972 0.42 +0.8
845,549 + GFF1972 0.45 +0.1
845,549 + GFF1972 0.45 -0.7
845,549 + GFF1972 0.45 -1.0
845,549 + GFF1972 0.45 -1.3
845,549 + GFF1972 0.45 -0.5
845,549 + GFF1972 0.45 +0.7
845,549 + GFF1972 0.45 -1.0
845,549 + GFF1972 0.45 -1.1
845,550 - GFF1972 0.45 -0.9
845,550 - GFF1972 0.45 +1.4
845,550 - GFF1972 0.45 -1.0
845,550 - GFF1972 0.45 +0.1
845,550 - GFF1972 0.45 -1.3

Or see this region's nucleotide sequence