Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1904 and GFF1905 are separated by 83 nucleotides GFF1905 and GFF1906 are separated by 57 nucleotides GFF1906 and GFF1907 are separated by 152 nucleotides
GFF1904 - Hydrogen peroxide-inducible genes activator, at 778,975 to 779,892
GFF1904
GFF1905 - membrane protein, putative, at 779,976 to 780,716
GFF1905
GFF1906 - hypothetical protein, at 780,774 to 781,421
GFF1906
GFF1907 - membrane protein, putative, at 781,574 to 782,695
GFF1907
Position (kb) 779
780
781 Strain fitness (log2 ratio) -1
0
1 at 778.976 kb on + strand at 778.976 kb on + strand at 778.976 kb on + strand at 778.977 kb on - strand at 779.920 kb on + strand at 779.920 kb on + strand at 779.921 kb on - strand at 780.435 kb on + strand, within GFF1905 at 780.436 kb on - strand, within GFF1905 at 780.667 kb on - strand at 780.667 kb on - strand at 780.667 kb on - strand at 780.667 kb on - strand at 780.712 kb on + strand at 780.713 kb on - strand at 780.714 kb on + strand at 780.715 kb on - strand at 780.775 kb on + strand at 781.052 kb on - strand, within GFF1906 at 781.463 kb on - strand at 781.478 kb on + strand at 781.478 kb on + strand at 781.478 kb on + strand at 781.478 kb on + strand at 781.478 kb on + strand at 781.479 kb on - strand at 781.479 kb on - strand at 781.479 kb on - strand at 781.479 kb on - strand at 781.479 kb on - strand at 781.479 kb on - strand at 781.658 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 778,976 + -0.2 778,976 + +1.0 778,976 + +0.2 778,977 - -0.1 779,920 + -1.0 779,920 + +0.4 779,921 - +1.3 780,435 + GFF1905 0.62 +0.8 780,436 - GFF1905 0.62 +0.3 780,667 - -0.1 780,667 - -1.1 780,667 - -0.1 780,667 - +0.1 780,712 + -0.1 780,713 - +0.1 780,714 + +0.3 780,715 - +1.6 780,775 + +0.3 781,052 - GFF1906 0.43 -0.8 781,463 - +0.6 781,478 + +0.1 781,478 + +0.2 781,478 + -0.2 781,478 + +0.2 781,478 + -0.9 781,479 - -0.0 781,479 - -0.5 781,479 - -0.4 781,479 - -0.2 781,479 - +0.5 781,479 - +0.4 781,658 + -0.2
Or see this region's nucleotide sequence