Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1870 and GFF1871 are separated by 2 nucleotides GFF1871 and GFF1872 are separated by 40 nucleotides GFF1872 and GFF1873 are separated by 8 nucleotides
GFF1870 - Zn-dependent protease with chaperone function, at 735,248 to 736,153
GFF1870
GFF1871 - Hypothetical metal-binding enzyme, YcbL homolog, at 736,156 to 736,794
GFF1871
GFF1872 - Phenylalanyl-tRNA synthetase beta subunit, at 736,835 to 737,320
GFF1872
GFF1873 - Transcriptional regulator, at 737,329 to 738,240
GFF1873
Position (kb) 736
737
738 Strain fitness (log2 ratio) -1
0
1 at 736.130 kb on + strand at 736.130 kb on + strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.131 kb on - strand at 736.172 kb on + strand at 736.173 kb on - strand at 736.173 kb on - strand at 736.173 kb on - strand at 736.395 kb on + strand, within GFF1871 at 736.396 kb on - strand, within GFF1871 at 736.784 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.819 kb on + strand at 736.820 kb on - strand at 736.820 kb on - strand at 736.838 kb on + strand at 736.838 kb on + strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.839 kb on - strand at 736.919 kb on + strand, within GFF1872 at 736.919 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.114 kb on + strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.115 kb on - strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.123 kb on + strand, within GFF1872 at 737.124 kb on - strand, within GFF1872 at 737.255 kb on + strand, within GFF1872 at 737.255 kb on + strand, within GFF1872 at 737.256 kb on - strand, within GFF1872 at 737.256 kb on - strand, within GFF1872 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.783 kb on + strand, within GFF1873 at 737.783 kb on + strand, within GFF1873 at 737.924 kb on + strand, within GFF1873 at 737.924 kb on + strand, within GFF1873 at 737.925 kb on - strand, within GFF1873 at 737.925 kb on - strand, within GFF1873 at 738.034 kb on - strand, within GFF1873
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 736,130 + +0.8 736,130 + -0.5 736,131 - +0.4 736,131 - -0.2 736,131 - +0.5 736,172 + -0.1 736,173 - -0.3 736,173 - +1.0 736,173 - -0.3 736,395 + GFF1871 0.37 -0.2 736,396 - GFF1871 0.38 +1.6 736,784 + -0.9 736,819 + +0.9 736,819 + -1.3 736,819 + +0.3 736,819 + -0.0 736,819 + -0.3 736,820 - -0.2 736,820 - -0.2 736,838 + -0.4 736,838 + +0.1 736,839 - +0.0 736,839 - +1.0 736,839 - +0.2 736,839 - -0.0 736,919 + GFF1872 0.17 +0.1 736,919 + GFF1872 0.17 -0.3 737,114 + GFF1872 0.57 -0.3 737,114 + GFF1872 0.57 -0.3 737,115 - GFF1872 0.58 -0.7 737,115 - GFF1872 0.58 -0.0 737,115 - GFF1872 0.58 -0.4 737,123 + GFF1872 0.59 +1.6 737,123 + GFF1872 0.59 -0.0 737,123 + GFF1872 0.59 +0.4 737,124 - GFF1872 0.59 -0.1 737,255 + GFF1872 0.86 +0.6 737,255 + GFF1872 0.86 -1.0 737,256 - GFF1872 0.87 +0.6 737,256 - GFF1872 0.87 +0.2 737,618 + GFF1873 0.32 +0.8 737,618 + GFF1873 0.32 +1.0 737,618 + GFF1873 0.32 -0.2 737,619 - GFF1873 0.32 +1.6 737,619 - GFF1873 0.32 +0.3 737,783 + GFF1873 0.50 -0.3 737,783 + GFF1873 0.50 -0.7 737,924 + GFF1873 0.65 +0.3 737,924 + GFF1873 0.65 -1.1 737,925 - GFF1873 0.65 -0.9 737,925 - GFF1873 0.65 -0.2 738,034 - GFF1873 0.77 -0.8
Or see this region's nucleotide sequence