Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1612 and GFF1613 are separated by 4 nucleotides GFF1613 and GFF1614 are separated by 21 nucleotides GFF1614 and GFF1615 are separated by 7 nucleotides
GFF1612 - Membrane protein, putative, at 466,039 to 466,956
GFF1612
GFF1613 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 466,961 to 467,677
GFF1613
GFF1614 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 467,699 to 469,660
GFF1614
GFF1615 - NAD-dependent epimerase/dehydratase, at 469,668 to 470,621
GFF1615
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1 at 466.792 kb on + strand, within GFF1612 at 466.792 kb on + strand, within GFF1612 at 466.897 kb on + strand at 466.898 kb on - strand at 466.955 kb on - strand at 467.037 kb on + strand, within GFF1613 at 467.113 kb on - strand, within GFF1613 at 467.263 kb on - strand, within GFF1613 at 467.611 kb on + strand at 467.611 kb on + strand at 467.864 kb on + strand at 467.865 kb on - strand at 467.942 kb on + strand, within GFF1614 at 467.942 kb on + strand, within GFF1614 at 467.943 kb on - strand, within GFF1614 at 467.943 kb on - strand, within GFF1614 at 468.062 kb on + strand, within GFF1614 at 468.062 kb on + strand, within GFF1614 at 468.063 kb on - strand, within GFF1614 at 468.063 kb on - strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.341 kb on + strand, within GFF1614 at 468.342 kb on - strand, within GFF1614 at 468.342 kb on - strand, within GFF1614 at 468.342 kb on - strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.578 kb on + strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.579 kb on - strand, within GFF1614 at 468.702 kb on - strand, within GFF1614 at 468.807 kb on - strand, within GFF1614 at 468.807 kb on - strand, within GFF1614 at 468.974 kb on + strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 468.975 kb on - strand, within GFF1614 at 469.181 kb on + strand, within GFF1614 at 469.181 kb on + strand, within GFF1614 at 469.181 kb on + strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.182 kb on - strand, within GFF1614 at 469.187 kb on + strand, within GFF1614 at 469.187 kb on + strand, within GFF1614 at 469.187 kb on + strand, within GFF1614 at 469.188 kb on - strand, within GFF1614 at 469.188 kb on - strand, within GFF1614 at 469.368 kb on - strand, within GFF1614 at 469.424 kb on + strand, within GFF1614 at 469.523 kb on + strand at 469.524 kb on - strand at 469.524 kb on - strand at 469.556 kb on + strand at 469.556 kb on + strand at 469.557 kb on - strand at 469.557 kb on - strand at 470.034 kb on + strand, within GFF1615 at 470.559 kb on + strand at 470.559 kb on + strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.560 kb on - strand at 470.598 kb on + strand at 470.598 kb on + strand at 470.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 466,792 + GFF1612 0.82 +0.3 466,792 + GFF1612 0.82 +0.9 466,897 + +0.4 466,898 - +0.5 466,955 - +0.3 467,037 + GFF1613 0.11 -0.9 467,113 - GFF1613 0.21 -1.1 467,263 - GFF1613 0.42 -1.7 467,611 + -0.0 467,611 + +0.1 467,864 + +0.1 467,865 - +0.9 467,942 + GFF1614 0.12 +0.2 467,942 + GFF1614 0.12 +0.2 467,943 - GFF1614 0.12 +0.6 467,943 - GFF1614 0.12 -0.7 468,062 + GFF1614 0.19 -0.1 468,062 + GFF1614 0.19 +0.3 468,063 - GFF1614 0.19 -0.5 468,063 - GFF1614 0.19 +0.4 468,341 + GFF1614 0.33 +0.7 468,341 + GFF1614 0.33 -0.8 468,341 + GFF1614 0.33 -0.7 468,341 + GFF1614 0.33 +0.0 468,342 - GFF1614 0.33 -0.4 468,342 - GFF1614 0.33 -0.2 468,342 - GFF1614 0.33 -0.0 468,578 + GFF1614 0.45 +0.9 468,578 + GFF1614 0.45 -0.1 468,578 + GFF1614 0.45 +0.9 468,578 + GFF1614 0.45 -0.2 468,578 + GFF1614 0.45 +0.4 468,579 - GFF1614 0.45 -1.3 468,579 - GFF1614 0.45 +0.4 468,579 - GFF1614 0.45 +0.9 468,579 - GFF1614 0.45 -1.7 468,579 - GFF1614 0.45 -0.2 468,702 - GFF1614 0.51 -0.3 468,807 - GFF1614 0.56 +0.3 468,807 - GFF1614 0.56 -0.1 468,974 + GFF1614 0.65 -0.4 468,975 - GFF1614 0.65 +0.7 468,975 - GFF1614 0.65 +1.6 468,975 - GFF1614 0.65 -0.2 468,975 - GFF1614 0.65 +0.9 468,975 - GFF1614 0.65 -1.1 469,181 + GFF1614 0.76 +0.6 469,181 + GFF1614 0.76 -0.3 469,181 + GFF1614 0.76 -2.1 469,182 - GFF1614 0.76 +0.2 469,182 - GFF1614 0.76 +0.2 469,182 - GFF1614 0.76 +0.1 469,182 - GFF1614 0.76 +1.5 469,182 - GFF1614 0.76 +0.1 469,182 - GFF1614 0.76 +0.1 469,187 + GFF1614 0.76 +0.0 469,187 + GFF1614 0.76 +0.4 469,187 + GFF1614 0.76 +0.6 469,188 - GFF1614 0.76 +0.7 469,188 - GFF1614 0.76 +0.9 469,368 - GFF1614 0.85 -0.9 469,424 + GFF1614 0.88 -1.1 469,523 + -0.1 469,524 - +0.4 469,524 - -0.5 469,556 + +0.0 469,556 + +0.2 469,557 - -0.4 469,557 - -0.1 470,034 + GFF1615 0.38 -1.7 470,559 + -0.1 470,559 + -0.0 470,560 - -0.8 470,560 - -0.4 470,560 - +0.4 470,560 - +0.9 470,560 - -0.5 470,560 - -1.1 470,598 + +0.9 470,598 + +0.4 470,654 + +0.0
Or see this region's nucleotide sequence