Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1609 and GFF1610 are separated by 26 nucleotides GFF1610 and GFF1611 are separated by 126 nucleotides GFF1611 and GFF1612 are separated by 5 nucleotides GFF1612 and GFF1613 are separated by 4 nucleotides
GFF1609 - Regulator of competence-specific genes, at 463,989 to 464,345
GFF1609
GFF1610 - hypothetical protein, at 464,372 to 464,878
GFF1610
GFF1611 - Glycine cleavage system transcriptional activator, at 465,005 to 466,033
GFF1611
GFF1612 - Membrane protein, putative, at 466,039 to 466,956
GFF1612
GFF1613 - 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2), at 466,961 to 467,677
GFF1613
Position (kb) 465
466
467 Strain fitness (log2 ratio) -2
-1
0
1 at 464.229 kb on + strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.230 kb on - strand, within GFF1609 at 464.343 kb on + strand at 464.343 kb on + strand at 464.344 kb on - strand at 464.430 kb on + strand, within GFF1610 at 464.956 kb on + strand at 464.956 kb on + strand at 464.956 kb on + strand at 464.956 kb on + strand at 464.956 kb on + strand at 464.957 kb on - strand at 464.957 kb on - strand at 464.957 kb on - strand at 464.957 kb on - strand at 464.963 kb on + strand at 464.963 kb on + strand at 464.963 kb on + strand at 464.964 kb on - strand at 464.964 kb on - strand at 464.964 kb on - strand at 464.968 kb on + strand at 464.968 kb on + strand at 464.968 kb on + strand at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.746 kb on + strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.747 kb on - strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.755 kb on + strand, within GFF1611 at 465.756 kb on - strand, within GFF1611 at 465.756 kb on - strand, within GFF1611 at 465.756 kb on - strand, within GFF1611 at 465.893 kb on + strand, within GFF1611 at 465.893 kb on + strand, within GFF1611 at 465.894 kb on - strand, within GFF1611 at 466.153 kb on + strand, within GFF1612 at 466.153 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.213 kb on + strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.214 kb on - strand, within GFF1612 at 466.415 kb on + strand, within GFF1612 at 466.416 kb on - strand, within GFF1612 at 466.550 kb on - strand, within GFF1612 at 466.613 kb on + strand, within GFF1612 at 466.613 kb on + strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.614 kb on - strand, within GFF1612 at 466.792 kb on + strand, within GFF1612 at 466.792 kb on + strand, within GFF1612 at 466.897 kb on + strand at 466.898 kb on - strand at 466.955 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 464,229 + GFF1609 0.67 +0.0 464,230 - GFF1609 0.68 +0.8 464,230 - GFF1609 0.68 -0.1 464,230 - GFF1609 0.68 +0.6 464,343 + -0.1 464,343 + -1.1 464,344 - +0.1 464,430 + GFF1610 0.11 -0.4 464,956 + -0.2 464,956 + -1.9 464,956 + -0.3 464,956 + -0.7 464,956 + -0.1 464,957 - -0.1 464,957 - -0.8 464,957 - +0.5 464,957 - -0.7 464,963 + -1.4 464,963 + -0.8 464,963 + -0.4 464,964 - -0.1 464,964 - -0.3 464,964 - -0.1 464,968 + -0.4 464,968 + +0.2 464,968 + +1.4 465,746 + GFF1611 0.72 -1.0 465,746 + GFF1611 0.72 +1.2 465,746 + GFF1611 0.72 -0.2 465,746 + GFF1611 0.72 +0.1 465,746 + GFF1611 0.72 +0.0 465,746 + GFF1611 0.72 -0.0 465,746 + GFF1611 0.72 -0.1 465,746 + GFF1611 0.72 -0.3 465,746 + GFF1611 0.72 -0.0 465,746 + GFF1611 0.72 +0.1 465,746 + GFF1611 0.72 +0.1 465,747 - GFF1611 0.72 +0.3 465,747 - GFF1611 0.72 +0.1 465,747 - GFF1611 0.72 +0.0 465,747 - GFF1611 0.72 -0.8 465,747 - GFF1611 0.72 +0.0 465,747 - GFF1611 0.72 -0.6 465,747 - GFF1611 0.72 -0.2 465,755 + GFF1611 0.73 -0.2 465,755 + GFF1611 0.73 +0.4 465,755 + GFF1611 0.73 -0.6 465,755 + GFF1611 0.73 -0.4 465,755 + GFF1611 0.73 -0.3 465,756 - GFF1611 0.73 -0.1 465,756 - GFF1611 0.73 -0.1 465,756 - GFF1611 0.73 -0.3 465,893 + GFF1611 0.86 +0.3 465,893 + GFF1611 0.86 -0.6 465,894 - GFF1611 0.86 +0.2 466,153 + GFF1612 0.12 +0.5 466,153 + GFF1612 0.12 +0.1 466,213 + GFF1612 0.19 +0.5 466,213 + GFF1612 0.19 -0.1 466,213 + GFF1612 0.19 -0.5 466,213 + GFF1612 0.19 -0.8 466,213 + GFF1612 0.19 -0.7 466,213 + GFF1612 0.19 -0.2 466,213 + GFF1612 0.19 -0.4 466,213 + GFF1612 0.19 +1.0 466,214 - GFF1612 0.19 +0.9 466,214 - GFF1612 0.19 -0.3 466,214 - GFF1612 0.19 +0.5 466,415 + GFF1612 0.41 +0.3 466,416 - GFF1612 0.41 -1.1 466,550 - GFF1612 0.56 -0.2 466,613 + GFF1612 0.63 -0.2 466,613 + GFF1612 0.63 -0.0 466,614 - GFF1612 0.63 +0.2 466,614 - GFF1612 0.63 -0.4 466,614 - GFF1612 0.63 -0.2 466,792 + GFF1612 0.82 +0.3 466,792 + GFF1612 0.82 +0.9 466,897 + +0.4 466,898 - +0.5 466,955 - +0.3
Or see this region's nucleotide sequence