Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1519 and GFF1520 are separated by 253 nucleotides GFF1520 and GFF1521 overlap by 4 nucleotides
GFF1519 - Maebl, at 373,600 to 374,046
GFF1519
GFF1520 - Salicylate hydroxylase (EC 1.14.13.1), at 374,300 to 375,946
GFF1520
GFF1521 - L-lactate dehydrogenase (EC 1.1.2.3), at 375,943 to 377,082
GFF1521
Position (kb) 374
375
376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 373.372 kb on + strand at 373.372 kb on + strand at 373.373 kb on - strand at 373.373 kb on - strand at 373.373 kb on - strand at 373.376 kb on + strand at 373.377 kb on - strand at 373.377 kb on - strand at 373.419 kb on - strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.461 kb on + strand at 373.462 kb on - strand at 373.516 kb on + strand at 373.516 kb on + strand at 373.516 kb on + strand at 373.516 kb on + strand at 373.516 kb on + strand at 373.517 kb on - strand at 373.517 kb on - strand at 373.517 kb on - strand at 373.517 kb on - strand at 373.667 kb on + strand, within GFF1519 at 373.667 kb on + strand, within GFF1519 at 373.667 kb on + strand, within GFF1519 at 373.668 kb on - strand, within GFF1519 at 373.908 kb on + strand, within GFF1519 at 374.288 kb on - strand at 374.288 kb on - strand at 374.301 kb on + strand at 374.301 kb on + strand at 374.301 kb on + strand at 374.301 kb on + strand at 374.301 kb on + strand at 374.302 kb on - strand at 374.302 kb on - strand at 374.302 kb on - strand at 374.302 kb on - strand at 374.545 kb on - strand, within GFF1520 at 374.545 kb on - strand, within GFF1520 at 374.625 kb on + strand, within GFF1520 at 374.626 kb on - strand, within GFF1520 at 374.673 kb on + strand, within GFF1520 at 374.673 kb on + strand, within GFF1520 at 374.673 kb on + strand, within GFF1520 at 374.673 kb on + strand, within GFF1520 at 374.673 kb on + strand, within GFF1520 at 374.674 kb on - strand, within GFF1520 at 374.706 kb on + strand, within GFF1520 at 374.706 kb on + strand, within GFF1520 at 374.707 kb on - strand, within GFF1520 at 374.707 kb on - strand, within GFF1520 at 374.728 kb on - strand, within GFF1520 at 374.728 kb on - strand, within GFF1520 at 374.883 kb on + strand, within GFF1520 at 375.096 kb on + strand, within GFF1520 at 375.183 kb on + strand, within GFF1520 at 375.183 kb on + strand, within GFF1520 at 375.183 kb on + strand, within GFF1520 at 375.184 kb on - strand, within GFF1520 at 375.222 kb on + strand, within GFF1520 at 375.222 kb on + strand, within GFF1520 at 375.222 kb on + strand, within GFF1520 at 375.223 kb on - strand, within GFF1520 at 375.250 kb on - strand, within GFF1520 at 375.250 kb on - strand, within GFF1520 at 375.276 kb on + strand, within GFF1520 at 375.277 kb on - strand, within GFF1520 at 375.564 kb on + strand, within GFF1520 at 375.564 kb on + strand, within GFF1520 at 375.633 kb on + strand, within GFF1520 at 375.696 kb on + strand, within GFF1520 at 375.696 kb on + strand, within GFF1520 at 376.079 kb on + strand, within GFF1521 at 376.080 kb on - strand, within GFF1521 at 376.704 kb on - strand, within GFF1521 at 376.713 kb on - strand, within GFF1521
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 373,372 + +1.2 373,372 + +1.7 373,373 - -0.9 373,373 - +0.3 373,373 - -0.8 373,376 + -0.1 373,377 - -0.3 373,377 - -0.3 373,419 - +0.8 373,461 + -0.5 373,461 + +0.0 373,461 + -0.3 373,461 + -0.5 373,462 - +1.5 373,516 + -1.4 373,516 + -0.8 373,516 + -0.1 373,516 + +0.5 373,516 + +1.1 373,517 - +1.3 373,517 - +0.6 373,517 - -0.3 373,517 - -0.2 373,667 + GFF1519 0.15 +0.1 373,667 + GFF1519 0.15 -0.7 373,667 + GFF1519 0.15 +1.1 373,668 - GFF1519 0.15 -2.9 373,908 + GFF1519 0.69 +1.5 374,288 - +1.1 374,288 - +1.2 374,301 + +0.2 374,301 + +1.2 374,301 + -0.9 374,301 + -0.8 374,301 + -0.8 374,302 - +0.8 374,302 - +1.9 374,302 - +0.5 374,302 - +0.2 374,545 - GFF1520 0.15 +0.2 374,545 - GFF1520 0.15 -2.1 374,625 + GFF1520 0.20 +0.2 374,626 - GFF1520 0.20 -1.1 374,673 + GFF1520 0.23 -0.7 374,673 + GFF1520 0.23 -0.4 374,673 + GFF1520 0.23 +0.4 374,673 + GFF1520 0.23 -0.6 374,673 + GFF1520 0.23 +0.2 374,674 - GFF1520 0.23 -0.5 374,706 + GFF1520 0.25 -0.4 374,706 + GFF1520 0.25 -2.3 374,707 - GFF1520 0.25 -0.5 374,707 - GFF1520 0.25 -0.4 374,728 - GFF1520 0.26 +0.2 374,728 - GFF1520 0.26 -0.4 374,883 + GFF1520 0.35 -0.5 375,096 + GFF1520 0.48 +0.4 375,183 + GFF1520 0.54 +0.7 375,183 + GFF1520 0.54 +0.8 375,183 + GFF1520 0.54 -1.7 375,184 - GFF1520 0.54 -0.1 375,222 + GFF1520 0.56 +0.5 375,222 + GFF1520 0.56 -0.1 375,222 + GFF1520 0.56 +0.3 375,223 - GFF1520 0.56 -0.1 375,250 - GFF1520 0.58 -1.4 375,250 - GFF1520 0.58 +0.3 375,276 + GFF1520 0.59 -1.0 375,277 - GFF1520 0.59 -0.0 375,564 + GFF1520 0.77 -0.1 375,564 + GFF1520 0.77 -1.5 375,633 + GFF1520 0.81 +0.1 375,696 + GFF1520 0.85 +0.3 375,696 + GFF1520 0.85 -1.4 376,079 + GFF1521 0.12 +0.6 376,080 - GFF1521 0.12 +0.1 376,704 - GFF1521 0.67 -0.2 376,713 - GFF1521 0.68 -0.4
Or see this region's nucleotide sequence