Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1500

Experiment: Ying_sugar7 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep B; time point 3
349,709	+		GFF1500	0.24	-1.3
349,710	-		GFF1500	0.24	-0.1
349,710	-		GFF1500	0.24	-0.2
349,710	-		GFF1500	0.24	+0.8
349,904	+		GFF1500	0.44	+0.5
349,905	-		GFF1500	0.44	-0.0
349,905	-		GFF1500	0.44	+0.0
349,944	-		GFF1500	0.48	-1.1
350,105	+		GFF1500	0.65	-0.2
350,105	+		GFF1500	0.65	-0.1
350,106	-		GFF1500	0.66	-0.5
350,106	-		GFF1500	0.66	+1.9
350,106	-		GFF1500	0.66	+0.9
350,106	-		GFF1500	0.66	-0.1
350,106	-		GFF1500	0.66	+0.2
350,106	-		GFF1500	0.66	-0.3
350,163	-		GFF1500	0.72	+1.2
350,192	+		GFF1500	0.75	-0.4
350,585	+				+1.1
350,586	-				+0.2
350,586	-				-0.0
350,774	+				+1.1
350,774	+				-0.3