Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1408 and GFF1409 are separated by 82 nucleotides GFF1409 and GFF1410 are separated by 9 nucleotides GFF1410 and GFF1411 are separated by 26 nucleotides GFF1411 and GFF1412 are separated by 37 nucleotides
GFF1408 - Flagellar P-ring protein FlgI, at 270,318 to 271,406
GFF1408
GFF1409 - Flagellar L-ring protein FlgH, at 271,489 to 272,184
GFF1409
GFF1410 - Flagellar basal-body rod protein FlgG, at 272,194 to 272,976
GFF1410
GFF1411 - Flagellar basal-body rod protein FlgF, at 273,003 to 273,740
GFF1411
GFF1412 - Flagellar hook protein FlgE, at 273,778 to 274,992
GFF1412
Position (kb) 272
273 Strain fitness (log2 ratio) -1
0
1 at 271.222 kb on + strand, within GFF1408 at 271.223 kb on - strand, within GFF1408 at 271.223 kb on - strand, within GFF1408 at 271.223 kb on - strand, within GFF1408 at 271.246 kb on + strand, within GFF1408 at 271.246 kb on + strand, within GFF1408 at 271.247 kb on - strand, within GFF1408 at 271.247 kb on - strand, within GFF1408 at 272.004 kb on - strand, within GFF1409 at 272.078 kb on + strand, within GFF1409 at 272.259 kb on - strand at 272.324 kb on + strand, within GFF1410 at 272.324 kb on + strand, within GFF1410 at 272.325 kb on - strand, within GFF1410 at 272.325 kb on - strand, within GFF1410 at 272.397 kb on - strand, within GFF1410 at 272.560 kb on - strand, within GFF1410 at 272.637 kb on - strand, within GFF1410 at 272.840 kb on + strand, within GFF1410 at 272.840 kb on + strand, within GFF1410 at 272.841 kb on - strand, within GFF1410 at 273.445 kb on + strand, within GFF1411 at 273.445 kb on + strand, within GFF1411 at 273.445 kb on + strand, within GFF1411 at 273.482 kb on - strand, within GFF1411 at 273.692 kb on - strand at 273.724 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand at 273.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 271,222 + GFF1408 0.83 +0.3 271,223 - GFF1408 0.83 +0.3 271,223 - GFF1408 0.83 -0.3 271,223 - GFF1408 0.83 -0.3 271,246 + GFF1408 0.85 +0.3 271,246 + GFF1408 0.85 +0.4 271,247 - GFF1408 0.85 -0.1 271,247 - GFF1408 0.85 -0.0 272,004 - GFF1409 0.74 -0.4 272,078 + GFF1409 0.85 -1.4 272,259 - +0.9 272,324 + GFF1410 0.17 +0.6 272,324 + GFF1410 0.17 +0.6 272,325 - GFF1410 0.17 +0.7 272,325 - GFF1410 0.17 +0.2 272,397 - GFF1410 0.26 +0.5 272,560 - GFF1410 0.47 +0.4 272,637 - GFF1410 0.57 +0.4 272,840 + GFF1410 0.83 -1.0 272,840 + GFF1410 0.83 +0.8 272,841 - GFF1410 0.83 -0.7 273,445 + GFF1411 0.60 +0.5 273,445 + GFF1411 0.60 +0.3 273,445 + GFF1411 0.60 -0.7 273,482 - GFF1411 0.65 -0.7 273,692 - +0.3 273,724 + +0.3 273,845 + -0.1 273,845 + +0.2 273,845 + +0.5
Or see this region's nucleotide sequence