Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1401 and GFF1402 overlap by 22 nucleotides GFF1402 and GFF1403 are separated by 22 nucleotides GFF1403 and GFF1404 are separated by 16 nucleotides
GFF1401 - Probable glycosyltransferase, at 262,935 to 264,182
GFF1401
GFF1402 - Queuosine Biosynthesis QueC ATPase, at 264,161 to 264,928
GFF1402
GFF1403 - EAL domain protein, at 264,951 to 266,150
GFF1403
GFF1404 - Flagellar hook-associated protein FlgL, at 266,167 to 267,384
GFF1404
Position (kb) 264
265
266
267 Strain fitness (log2 ratio) -2
-1
0
1
2 at 264.112 kb on - strand at 264.180 kb on + strand at 264.180 kb on + strand at 264.180 kb on + strand at 264.181 kb on - strand at 264.181 kb on - strand at 264.235 kb on - strand at 264.270 kb on + strand, within GFF1402 at 264.271 kb on - strand, within GFF1402 at 264.271 kb on - strand, within GFF1402 at 264.271 kb on - strand, within GFF1402 at 264.271 kb on - strand, within GFF1402 at 264.478 kb on - strand, within GFF1402 at 264.932 kb on - strand at 265.124 kb on - strand, within GFF1403 at 265.243 kb on + strand, within GFF1403 at 265.243 kb on + strand, within GFF1403 at 265.243 kb on + strand, within GFF1403 at 265.243 kb on + strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.244 kb on - strand, within GFF1403 at 265.484 kb on - strand, within GFF1403 at 265.585 kb on + strand, within GFF1403 at 265.586 kb on - strand, within GFF1403 at 266.107 kb on + strand at 266.108 kb on - strand at 266.210 kb on + strand at 266.210 kb on + strand at 266.210 kb on + strand at 266.211 kb on - strand at 266.211 kb on - strand at 266.211 kb on - strand at 266.450 kb on + strand, within GFF1404 at 266.450 kb on + strand, within GFF1404 at 266.474 kb on + strand, within GFF1404 at 266.621 kb on + strand, within GFF1404 at 266.622 kb on - strand, within GFF1404 at 266.622 kb on - strand, within GFF1404 at 266.678 kb on + strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.679 kb on - strand, within GFF1404 at 266.717 kb on + strand, within GFF1404 at 266.717 kb on + strand, within GFF1404 at 266.718 kb on - strand, within GFF1404 at 266.978 kb on + strand, within GFF1404
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 264,112 - -2.1 264,180 + +0.3 264,180 + -0.9 264,180 + -0.9 264,181 - -0.7 264,181 - -0.3 264,235 - -0.1 264,270 + GFF1402 0.14 -0.4 264,271 - GFF1402 0.14 -0.1 264,271 - GFF1402 0.14 -0.6 264,271 - GFF1402 0.14 -1.7 264,271 - GFF1402 0.14 -0.8 264,478 - GFF1402 0.41 +0.5 264,932 - +1.9 265,124 - GFF1403 0.14 -1.3 265,243 + GFF1403 0.24 -2.6 265,243 + GFF1403 0.24 -0.9 265,243 + GFF1403 0.24 -2.4 265,243 + GFF1403 0.24 -1.0 265,244 - GFF1403 0.24 -0.1 265,244 - GFF1403 0.24 -0.9 265,244 - GFF1403 0.24 -1.2 265,244 - GFF1403 0.24 -0.9 265,484 - GFF1403 0.44 -0.6 265,585 + GFF1403 0.53 -1.1 265,586 - GFF1403 0.53 -0.6 266,107 + +1.3 266,108 - -1.3 266,210 + +0.9 266,210 + +0.2 266,210 + -0.7 266,211 - +0.5 266,211 - -0.4 266,211 - +1.1 266,450 + GFF1404 0.23 +0.1 266,450 + GFF1404 0.23 -0.7 266,474 + GFF1404 0.25 +0.1 266,621 + GFF1404 0.37 -0.6 266,622 - GFF1404 0.37 -1.4 266,622 - GFF1404 0.37 +0.7 266,678 + GFF1404 0.42 -0.5 266,679 - GFF1404 0.42 +1.1 266,679 - GFF1404 0.42 -1.9 266,679 - GFF1404 0.42 -0.2 266,679 - GFF1404 0.42 -0.8 266,679 - GFF1404 0.42 +0.2 266,717 + GFF1404 0.45 +0.7 266,717 + GFF1404 0.45 +0.2 266,718 - GFF1404 0.45 -0.3 266,978 + GFF1404 0.67 -0.6
Or see this region's nucleotide sequence