Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1333 and GFF1334 are separated by 32 nucleotides GFF1334 and GFF1335 are separated by 95 nucleotides GFF1335 and GFF1336 are separated by 18 nucleotides GFF1336 and GFF1337 overlap by 4 nucleotides
GFF1333 - Type IV pilus biogenesis protein PilQ, at 185,506 to 187,590
GFF1333
GFF1334 - Type IV pilus biogenesis protein PilP, at 187,623 to 188,078
GFF1334
GFF1335 - Type IV pilus biogenesis protein PilO, at 188,174 to 188,854
GFF1335
GFF1336 - Type IV pilus biogenesis protein PilN, at 188,873 to 189,490
GFF1336
GFF1337 - Type IV pilus biogenesis protein PilM, at 189,487 to 190,524
GFF1337
Position (kb) 188
189 Strain fitness (log2 ratio) -2
-1
0
1
2 at 187.259 kb on + strand, within GFF1333 at 187.259 kb on + strand, within GFF1333 at 187.260 kb on - strand, within GFF1333 at 187.629 kb on - strand at 187.629 kb on - strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.644 kb on + strand at 187.759 kb on + strand, within GFF1334 at 187.759 kb on + strand, within GFF1334 at 187.760 kb on - strand, within GFF1334 at 187.760 kb on - strand, within GFF1334 at 187.780 kb on + strand, within GFF1334 at 187.780 kb on + strand, within GFF1334 at 187.780 kb on + strand, within GFF1334 at 187.781 kb on - strand, within GFF1334 at 188.002 kb on + strand, within GFF1334 at 188.002 kb on + strand, within GFF1334 at 188.111 kb on + strand at 188.112 kb on - strand at 188.112 kb on - strand at 188.112 kb on - strand at 188.112 kb on - strand at 188.112 kb on - strand at 188.112 kb on - strand at 188.112 kb on - strand at 188.293 kb on + strand, within GFF1335 at 188.294 kb on - strand, within GFF1335 at 188.294 kb on - strand, within GFF1335 at 188.299 kb on + strand, within GFF1335 at 188.299 kb on + strand, within GFF1335 at 188.300 kb on - strand, within GFF1335 at 188.300 kb on - strand, within GFF1335 at 188.300 kb on - strand, within GFF1335 at 188.373 kb on + strand, within GFF1335 at 188.373 kb on + strand, within GFF1335 at 188.374 kb on - strand, within GFF1335 at 188.374 kb on - strand, within GFF1335 at 188.374 kb on - strand, within GFF1335 at 188.374 kb on - strand, within GFF1335 at 188.412 kb on + strand, within GFF1335 at 188.415 kb on + strand, within GFF1335 at 188.416 kb on - strand, within GFF1335 at 188.416 kb on - strand, within GFF1335 at 188.416 kb on - strand, within GFF1335 at 188.550 kb on + strand, within GFF1335 at 188.550 kb on + strand, within GFF1335 at 188.550 kb on + strand, within GFF1335 at 188.551 kb on - strand, within GFF1335 at 188.551 kb on - strand, within GFF1335 at 188.551 kb on - strand, within GFF1335 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.150 kb on + strand, within GFF1336 at 189.151 kb on - strand, within GFF1336 at 189.151 kb on - strand, within GFF1336 at 189.151 kb on - strand, within GFF1336 at 189.154 kb on + strand, within GFF1336 at 189.155 kb on - strand, within GFF1336 at 189.155 kb on - strand, within GFF1336 at 189.363 kb on + strand, within GFF1336 at 189.494 kb on + strand at 189.494 kb on + strand at 189.494 kb on + strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.495 kb on - strand at 189.530 kb on + strand at 189.530 kb on + strand at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.701 kb on + strand, within GFF1337 at 189.702 kb on - strand, within GFF1337 at 189.702 kb on - strand, within GFF1337 at 189.702 kb on - strand, within GFF1337 at 189.788 kb on + strand, within GFF1337 at 189.788 kb on + strand, within GFF1337 at 189.789 kb on - strand, within GFF1337 at 189.849 kb on - strand, within GFF1337
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 187,259 + GFF1333 0.84 +1.3 187,259 + GFF1333 0.84 +0.8 187,260 - GFF1333 0.84 +0.9 187,629 - +1.3 187,629 - +1.2 187,644 + +0.9 187,644 + +0.6 187,644 + +1.6 187,644 + +0.6 187,644 + +0.7 187,759 + GFF1334 0.30 +1.2 187,759 + GFF1334 0.30 +0.3 187,760 - GFF1334 0.30 +1.3 187,760 - GFF1334 0.30 +0.7 187,780 + GFF1334 0.34 +0.3 187,780 + GFF1334 0.34 +0.4 187,780 + GFF1334 0.34 +0.5 187,781 - GFF1334 0.35 -0.5 188,002 + GFF1334 0.83 +1.2 188,002 + GFF1334 0.83 +1.1 188,111 + +0.5 188,112 - +0.8 188,112 - +0.5 188,112 - +0.7 188,112 - +0.5 188,112 - +1.0 188,112 - +1.2 188,112 - +1.0 188,293 + GFF1335 0.17 +1.9 188,294 - GFF1335 0.18 +0.3 188,294 - GFF1335 0.18 +1.7 188,299 + GFF1335 0.18 +1.5 188,299 + GFF1335 0.18 -0.1 188,300 - GFF1335 0.19 +0.1 188,300 - GFF1335 0.19 +0.8 188,300 - GFF1335 0.19 +0.6 188,373 + GFF1335 0.29 -0.1 188,373 + GFF1335 0.29 +0.2 188,374 - GFF1335 0.29 +1.1 188,374 - GFF1335 0.29 +0.7 188,374 - GFF1335 0.29 +0.7 188,374 - GFF1335 0.29 -0.1 188,412 + GFF1335 0.35 +0.6 188,415 + GFF1335 0.35 +1.3 188,416 - GFF1335 0.36 +1.1 188,416 - GFF1335 0.36 -2.1 188,416 - GFF1335 0.36 +1.0 188,550 + GFF1335 0.55 +0.5 188,550 + GFF1335 0.55 +0.7 188,550 + GFF1335 0.55 +1.2 188,551 - GFF1335 0.55 +0.7 188,551 - GFF1335 0.55 +0.6 188,551 - GFF1335 0.55 +0.9 189,150 + GFF1336 0.45 +0.2 189,150 + GFF1336 0.45 +0.5 189,150 + GFF1336 0.45 +1.9 189,150 + GFF1336 0.45 +0.9 189,150 + GFF1336 0.45 +0.4 189,150 + GFF1336 0.45 +0.9 189,150 + GFF1336 0.45 +0.8 189,150 + GFF1336 0.45 +1.0 189,151 - GFF1336 0.45 +0.6 189,151 - GFF1336 0.45 +0.4 189,151 - GFF1336 0.45 +0.7 189,154 + GFF1336 0.45 -0.2 189,155 - GFF1336 0.46 +1.0 189,155 - GFF1336 0.46 +0.2 189,363 + GFF1336 0.79 +1.1 189,494 + -0.7 189,494 + +0.9 189,494 + +0.2 189,495 - +1.9 189,495 - +0.5 189,495 - +0.6 189,495 - +0.7 189,495 - +0.7 189,530 + +0.6 189,530 + +0.4 189,701 + GFF1337 0.21 +0.7 189,701 + GFF1337 0.21 +0.7 189,701 + GFF1337 0.21 +1.1 189,701 + GFF1337 0.21 +1.5 189,701 + GFF1337 0.21 +0.5 189,701 + GFF1337 0.21 +0.4 189,702 - GFF1337 0.21 -1.4 189,702 - GFF1337 0.21 +1.0 189,702 - GFF1337 0.21 -0.7 189,788 + GFF1337 0.29 +0.5 189,788 + GFF1337 0.29 +0.2 189,789 - GFF1337 0.29 +0.9 189,849 - GFF1337 0.35 +0.5
Or see this region's nucleotide sequence