Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1310

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1308 and GFF1309 are separated by 9 nucleotidesGFF1309 and GFF1310 are separated by 8 nucleotidesGFF1310 and GFF1311 are separated by 27 nucleotidesGFF1311 and GFF1312 are separated by 13 nucleotides GFF1308 - hypothetical protein, at 160,260 to 160,757 GFF1308 GFF1309 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 160,767 to 161,546 GFF1309 GFF1310 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16), at 161,555 to 162,295 GFF1310 GFF1311 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 162,323 to 162,985 GFF1311 GFF1312 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 162,999 to 163,619 GFF1312 Position (kb) 161 162 163Strain fitness (log2 ratio) -2 -1 0 1at 160.560 kb on + strand, within GFF1308at 160.560 kb on + strand, within GFF1308at 160.561 kb on - strand, within GFF1308at 160.561 kb on - strand, within GFF1308at 160.561 kb on - strand, within GFF1308at 160.561 kb on - strand, within GFF1308

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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160,560 + GFF1308 0.60 +0.4
160,560 + GFF1308 0.60 +1.2
160,561 - GFF1308 0.60 -0.9
160,561 - GFF1308 0.60 -0.0
160,561 - GFF1308 0.60 -1.9
160,561 - GFF1308 0.60 +0.4

Or see this region's nucleotide sequence