Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1144

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1143 and GFF1144 overlap by 4 nucleotidesGFF1144 and GFF1145 overlap by 4 nucleotides GFF1143 - hypothetical protein, at 379 to 732 GFF1143 GFF1144 - putative periplasmic protein kinase ArgK and related GTPases of G3E family, at 729 to 1,931 GFF1144 GFF1145 - Methylmalonyl-CoA mutase (EC 5.4.99.2), at 1,928 to 3,574 GFF1145 Position (kb) 0 1 2Strain fitness (log2 ratio) -1 0 1at 0.391 kb on + strandat 0.489 kb on - strand, within GFF1143at 0.775 kb on + strandat 0.839 kb on - strandat 0.839 kb on - strandat 1.151 kb on - strand, within GFF1144at 1.963 kb on - strandat 2.137 kb on - strand, within GFF1145at 2.313 kb on + strand, within GFF1145at 2.394 kb on + strand, within GFF1145

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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391 + -0.2
489 - GFF1143 0.31 +0.8
775 + +0.9
839 - +0.0
839 - -0.1
1,151 - GFF1144 0.35 -0.8
1,963 - +0.0
2,137 - GFF1145 0.13 +0.1
2,313 + GFF1145 0.23 -0.7
2,394 + GFF1145 0.28 -0.2

Or see this region's nucleotide sequence