Experiment: Ying_sugar7 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1113 and GFF1114 are separated by 1 nucleotides GFF1114 and GFF1115 are separated by 612 nucleotides
GFF1113 - Permease of the major facilitator superfamily, at 41,071 to 42,333
GFF1113
GFF1114 - NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12), at 42,335 to 43,378
GFF1114
GFF1115 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 43,991 to 46,078
GFF1115
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1
2 at 41.408 kb on + strand, within GFF1113 at 41.408 kb on + strand, within GFF1113 at 41.408 kb on + strand, within GFF1113 at 41.601 kb on - strand, within GFF1113 at 41.601 kb on - strand, within GFF1113 at 42.182 kb on + strand, within GFF1113 at 42.182 kb on + strand, within GFF1113 at 42.183 kb on - strand, within GFF1113 at 42.183 kb on - strand, within GFF1113 at 42.183 kb on - strand, within GFF1113 at 42.183 kb on - strand, within GFF1113 at 42.183 kb on - strand, within GFF1113 at 42.288 kb on - strand at 42.341 kb on - strand at 42.366 kb on - strand at 42.387 kb on + strand at 42.414 kb on + strand at 42.415 kb on - strand at 42.489 kb on + strand, within GFF1114 at 42.490 kb on - strand, within GFF1114 at 42.685 kb on - strand, within GFF1114 at 42.927 kb on + strand, within GFF1114 at 42.928 kb on - strand, within GFF1114 at 42.928 kb on - strand, within GFF1114 at 43.381 kb on - strand at 43.466 kb on + strand at 43.466 kb on + strand at 43.466 kb on + strand at 43.467 kb on - strand at 43.467 kb on - strand at 43.467 kb on - strand at 43.469 kb on + strand at 43.470 kb on - strand at 43.470 kb on - strand at 43.470 kb on - strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.472 kb on + strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.473 kb on - strand at 43.476 kb on + strand at 43.476 kb on + strand at 43.476 kb on + strand at 43.476 kb on + strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.477 kb on - strand at 43.521 kb on - strand at 43.554 kb on + strand at 43.554 kb on + strand at 43.687 kb on + strand at 43.688 kb on - strand at 43.857 kb on - strand at 43.859 kb on + strand at 43.860 kb on - strand at 43.860 kb on - strand at 43.979 kb on + strand at 43.980 kb on - strand at 43.980 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3 remove 41,408 + GFF1113 0.27 +0.2 41,408 + GFF1113 0.27 +1.6 41,408 + GFF1113 0.27 +1.6 41,601 - GFF1113 0.42 -0.5 41,601 - GFF1113 0.42 -0.1 42,182 + GFF1113 0.88 -0.2 42,182 + GFF1113 0.88 +0.6 42,183 - GFF1113 0.88 +0.4 42,183 - GFF1113 0.88 -0.1 42,183 - GFF1113 0.88 +0.2 42,183 - GFF1113 0.88 +0.0 42,183 - GFF1113 0.88 +0.1 42,288 - +0.4 42,341 - +1.8 42,366 - -0.2 42,387 + +0.5 42,414 + +0.1 42,415 - -0.1 42,489 + GFF1114 0.15 +0.1 42,490 - GFF1114 0.15 -0.7 42,685 - GFF1114 0.34 +0.8 42,927 + GFF1114 0.57 -0.7 42,928 - GFF1114 0.57 +0.2 42,928 - GFF1114 0.57 -0.2 43,381 - +1.2 43,466 + +1.2 43,466 + -0.7 43,466 + -0.3 43,467 - +0.8 43,467 - -0.3 43,467 - +0.8 43,469 + -0.8 43,470 - +0.0 43,470 - +0.2 43,470 - -0.6 43,472 + +1.8 43,472 + +0.3 43,472 + -0.3 43,472 + -0.6 43,472 + +0.1 43,473 - -0.2 43,473 - -1.5 43,473 - +0.4 43,473 - -1.0 43,473 - -0.2 43,476 + -0.8 43,476 + -1.4 43,476 + -0.0 43,476 + +0.6 43,477 - +0.0 43,477 - +0.8 43,477 - -0.2 43,477 - -0.8 43,477 - +1.6 43,477 - -0.7 43,521 - -0.7 43,554 + -0.2 43,554 + -0.3 43,687 + -0.5 43,688 - -0.2 43,857 - -0.1 43,859 + +0.1 43,860 - +0.1 43,860 - -1.2 43,979 + -0.3 43,980 - +0.2 43,980 - +1.8
Or see this region's nucleotide sequence