Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1011

Experiment: Ying_sugar7 rep B; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1010 and GFF1011 are separated by 215 nucleotidesGFF1011 and GFF1012 are separated by 36 nucleotidesGFF1012 and GFF1013 overlap by 1 nucleotides GFF1010 - Rieske (2Fe-2S) region, at 748,402 to 749,676 GFF1010 GFF1011 - Transcriptional regulator, IclR family, at 749,892 to 750,578 GFF1011 GFF1012 - Benzoate transport, ATP binding protein, at 750,615 to 751,337 GFF1012 GFF1013 - Benzoate transport, ATPase component, at 751,337 to 752,098 GFF1013 Position (kb) 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 749.078 kb on + strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.078 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.138 kb on + strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.139 kb on - strand, within GFF1010at 749.192 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.213 kb on + strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.214 kb on - strand, within GFF1010at 749.283 kb on + strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.284 kb on - strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.285 kb on + strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.286 kb on - strand, within GFF1010at 749.328 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.329 kb on + strand, within GFF1010at 749.330 kb on - strand, within GFF1010at 749.330 kb on - strand, within GFF1010at 749.448 kb on - strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.505 kb on + strand, within GFF1010at 749.506 kb on - strand, within GFF1010at 749.506 kb on - strand, within GFF1010at 749.506 kb on - strand, within GFF1010at 749.676 kb on + strandat 749.677 kb on - strandat 749.797 kb on - strandat 749.804 kb on + strandat 749.805 kb on - strandat 749.805 kb on - strandat 749.805 kb on - strandat 749.805 kb on - strandat 749.828 kb on + strandat 749.829 kb on - strandat 749.829 kb on - strandat 749.831 kb on - strandat 749.970 kb on + strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 749.971 kb on - strand, within GFF1011at 750.040 kb on + strand, within GFF1011at 750.040 kb on + strand, within GFF1011at 750.041 kb on - strand, within GFF1011at 750.091 kb on + strand, within GFF1011at 750.091 kb on + strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.092 kb on - strand, within GFF1011at 750.238 kb on - strand, within GFF1011at 750.307 kb on - strand, within GFF1011at 750.337 kb on + strand, within GFF1011at 750.337 kb on + strand, within GFF1011at 750.337 kb on + strand, within GFF1011at 750.338 kb on - strand, within GFF1011at 750.338 kb on - strand, within GFF1011at 750.345 kb on + strand, within GFF1011at 750.345 kb on + strand, within GFF1011at 750.345 kb on + strand, within GFF1011at 750.381 kb on + strand, within GFF1011at 750.382 kb on - strand, within GFF1011at 750.382 kb on - strand, within GFF1011at 750.382 kb on - strand, within GFF1011at 750.388 kb on + strand, within GFF1011at 750.517 kb on + strandat 750.517 kb on + strandat 750.517 kb on + strandat 750.517 kb on + strandat 750.518 kb on - strandat 750.518 kb on - strandat 750.518 kb on - strandat 750.524 kb on + strandat 750.524 kb on + strandat 750.525 kb on - strandat 750.576 kb on + strandat 750.577 kb on - strandat 750.577 kb on - strandat 750.577 kb on - strandat 750.580 kb on + strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.979 kb on + strand, within GFF1012at 750.979 kb on + strand, within GFF1012at 750.979 kb on + strand, within GFF1012at 750.979 kb on + strand, within GFF1012at 750.979 kb on + strand, within GFF1012at 750.979 kb on + strand, within GFF1012at 750.980 kb on - strand, within GFF1012at 750.980 kb on - strand, within GFF1012at 750.980 kb on - strand, within GFF1012at 751.078 kb on + strand, within GFF1012at 751.356 kb on + strandat 751.356 kb on + strandat 751.356 kb on + strandat 751.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep B; time point 3
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749,078 + GFF1010 0.53 +0.5
749,078 + GFF1010 0.53 +0.2
749,078 + GFF1010 0.53 +0.3
749,138 + GFF1010 0.58 +1.0
749,138 + GFF1010 0.58 +0.1
749,138 + GFF1010 0.58 +0.3
749,139 - GFF1010 0.58 -0.6
749,139 - GFF1010 0.58 -0.7
749,139 - GFF1010 0.58 +0.3
749,139 - GFF1010 0.58 -0.3
749,139 - GFF1010 0.58 +0.1
749,192 + GFF1010 0.62 -0.7
749,213 + GFF1010 0.64 -0.1
749,213 + GFF1010 0.64 +0.1
749,213 + GFF1010 0.64 +0.2
749,213 + GFF1010 0.64 +0.3
749,213 + GFF1010 0.64 +0.0
749,213 + GFF1010 0.64 -1.0
749,213 + GFF1010 0.64 +1.1
749,213 + GFF1010 0.64 -0.8
749,213 + GFF1010 0.64 -0.1
749,213 + GFF1010 0.64 -0.2
749,213 + GFF1010 0.64 -0.0
749,214 - GFF1010 0.64 +0.5
749,214 - GFF1010 0.64 -0.3
749,214 - GFF1010 0.64 +0.2
749,214 - GFF1010 0.64 -0.2
749,214 - GFF1010 0.64 +0.8
749,214 - GFF1010 0.64 -0.7
749,214 - GFF1010 0.64 +0.3
749,283 + GFF1010 0.69 -0.1
749,284 - GFF1010 0.69 -0.1
749,284 - GFF1010 0.69 -0.2
749,284 - GFF1010 0.69 +0.8
749,284 - GFF1010 0.69 +0.1
749,284 - GFF1010 0.69 +0.3
749,285 + GFF1010 0.69 -0.3
749,285 + GFF1010 0.69 -0.2
749,285 + GFF1010 0.69 -0.7
749,285 + GFF1010 0.69 +0.3
749,285 + GFF1010 0.69 +0.8
749,286 - GFF1010 0.69 -0.2
749,286 - GFF1010 0.69 -0.8
749,286 - GFF1010 0.69 -0.3
749,328 + GFF1010 0.73 -0.7
749,329 + GFF1010 0.73 -0.2
749,329 + GFF1010 0.73 +0.8
749,329 + GFF1010 0.73 +0.3
749,330 - GFF1010 0.73 -0.0
749,330 - GFF1010 0.73 -3.0
749,448 - GFF1010 0.82 -0.1
749,505 + GFF1010 0.87 -0.3
749,505 + GFF1010 0.87 +0.5
749,505 + GFF1010 0.87 +1.1
749,505 + GFF1010 0.87 +0.5
749,506 - GFF1010 0.87 +1.0
749,506 - GFF1010 0.87 +1.8
749,506 - GFF1010 0.87 +1.2
749,676 + +0.8
749,677 - +0.3
749,797 - -0.2
749,804 + +0.7
749,805 - -1.2
749,805 - +0.3
749,805 - +0.1
749,805 - -1.2
749,828 + +0.4
749,829 - -1.0
749,829 - -2.2
749,831 - -0.7
749,970 + GFF1011 0.11 -1.2
749,971 - GFF1011 0.11 -1.0
749,971 - GFF1011 0.11 -2.2
749,971 - GFF1011 0.11 -1.2
749,971 - GFF1011 0.11 -1.5
749,971 - GFF1011 0.11 -1.2
750,040 + GFF1011 0.22 -0.6
750,040 + GFF1011 0.22 -1.5
750,041 - GFF1011 0.22 -3.1
750,091 + GFF1011 0.29 -1.0
750,091 + GFF1011 0.29 -1.8
750,092 - GFF1011 0.29 -0.7
750,092 - GFF1011 0.29 -0.6
750,092 - GFF1011 0.29 -1.7
750,092 - GFF1011 0.29 -1.2
750,092 - GFF1011 0.29 -1.2
750,092 - GFF1011 0.29 -1.3
750,238 - GFF1011 0.50 -1.8
750,307 - GFF1011 0.60 -1.8
750,337 + GFF1011 0.65 -2.3
750,337 + GFF1011 0.65 -1.4
750,337 + GFF1011 0.65 -2.2
750,338 - GFF1011 0.65 -1.7
750,338 - GFF1011 0.65 -1.0
750,345 + GFF1011 0.66 -0.9
750,345 + GFF1011 0.66 -0.5
750,345 + GFF1011 0.66 -0.7
750,381 + GFF1011 0.71 -1.5
750,382 - GFF1011 0.71 -2.7
750,382 - GFF1011 0.71 -2.3
750,382 - GFF1011 0.71 -0.7
750,388 + GFF1011 0.72 -0.4
750,517 + -1.6
750,517 + -1.5
750,517 + -0.5
750,517 + -1.6
750,518 - -1.4
750,518 - -1.5
750,518 - -0.2
750,524 + -1.3
750,524 + -2.5
750,525 - -3.3
750,576 + -0.8
750,577 - -0.2
750,577 - +0.2
750,577 - +0.1
750,580 + -1.2
750,618 + -0.7
750,618 + -0.3
750,619 - +0.4
750,619 - +1.4
750,619 - -0.2
750,979 + GFF1012 0.50 -0.5
750,979 + GFF1012 0.50 -0.5
750,979 + GFF1012 0.50 -0.4
750,979 + GFF1012 0.50 +0.8
750,979 + GFF1012 0.50 +1.5
750,979 + GFF1012 0.50 +0.2
750,980 - GFF1012 0.50 -1.5
750,980 - GFF1012 0.50 -0.1
750,980 - GFF1012 0.50 -0.3
751,078 + GFF1012 0.64 +0.1
751,356 + -0.4
751,356 + -0.2
751,356 + +0.0
751,357 - -0.7

Or see this region's nucleotide sequence