Experiment: Right Thigh 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR41_RS04060 and RR41_RS04065 are separated by 14 nucleotides RR41_RS04065 and RR41_RS19205 are separated by 424 nucleotides
RR41_RS04060: RR41_RS04060 - ADP-forming succinate--CoA ligase subunit beta, at 832,811 to 833,977
_RS04060
RR41_RS04065: RR41_RS04065 - succinate--CoA ligase subunit alpha, at 833,992 to 834,882
_RS04065
RR41_RS19205: RR41_RS19205 - IS4-like element ISAba1 family transposase, at 835,307 to 836,397
_RS19205
Position (kb) 833
834
835 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 833.055 kb on + strand, within RR41_RS04060 at 833.061 kb on - strand, within RR41_RS04060 at 833.089 kb on - strand, within RR41_RS04060 at 833.115 kb on + strand, within RR41_RS04060 at 833.115 kb on + strand, within RR41_RS04060 at 833.155 kb on - strand, within RR41_RS04060 at 833.191 kb on + strand, within RR41_RS04060 at 833.278 kb on - strand, within RR41_RS04060 at 833.408 kb on - strand, within RR41_RS04060 at 833.443 kb on - strand, within RR41_RS04060 at 833.448 kb on + strand, within RR41_RS04060 at 833.460 kb on + strand, within RR41_RS04060 at 833.461 kb on - strand, within RR41_RS04060 at 833.461 kb on - strand, within RR41_RS04060 at 833.474 kb on - strand, within RR41_RS04060 at 833.564 kb on - strand, within RR41_RS04060 at 833.567 kb on + strand, within RR41_RS04060 at 833.568 kb on - strand, within RR41_RS04060 at 833.577 kb on + strand, within RR41_RS04060 at 833.578 kb on - strand, within RR41_RS04060 at 833.584 kb on + strand, within RR41_RS04060 at 833.630 kb on - strand, within RR41_RS04060 at 833.738 kb on - strand, within RR41_RS04060 at 833.866 kb on + strand at 833.881 kb on - strand at 834.003 kb on - strand at 834.023 kb on + strand at 834.109 kb on - strand, within RR41_RS04065 at 834.144 kb on - strand, within RR41_RS04065 at 834.200 kb on + strand, within RR41_RS04065 at 834.205 kb on + strand, within RR41_RS04065 at 834.209 kb on + strand, within RR41_RS04065 at 834.326 kb on + strand, within RR41_RS04065 at 834.396 kb on + strand, within RR41_RS04065 at 834.409 kb on - strand, within RR41_RS04065 at 834.496 kb on - strand, within RR41_RS04065 at 834.496 kb on - strand, within RR41_RS04065 at 834.552 kb on + strand, within RR41_RS04065 at 834.553 kb on - strand, within RR41_RS04065 at 834.679 kb on - strand, within RR41_RS04065 at 834.687 kb on - strand, within RR41_RS04065 at 834.689 kb on + strand, within RR41_RS04065 at 834.689 kb on + strand, within RR41_RS04065 at 834.695 kb on - strand, within RR41_RS04065 at 834.708 kb on - strand, within RR41_RS04065 at 834.730 kb on - strand, within RR41_RS04065 at 834.769 kb on - strand, within RR41_RS04065 at 834.814 kb on + strand at 834.857 kb on + strand at 834.880 kb on + strand at 834.881 kb on - strand at 834.968 kb on + strand at 834.969 kb on - strand at 834.970 kb on + strand at 834.978 kb on - strand at 835.031 kb on + strand at 835.098 kb on - strand at 835.108 kb on + strand at 835.126 kb on - strand at 835.152 kb on + strand at 835.201 kb on - strand at 835.203 kb on - strand at 835.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Right Thigh 3 remove 833,055 + RR41_RS04060 0.21 -2.5 833,061 - RR41_RS04060 0.21 +1.0 833,089 - RR41_RS04060 0.24 +0.0 833,115 + RR41_RS04060 0.26 +0.5 833,115 + RR41_RS04060 0.26 -2.0 833,155 - RR41_RS04060 0.29 -1.7 833,191 + RR41_RS04060 0.33 +1.0 833,278 - RR41_RS04060 0.40 +1.5 833,408 - RR41_RS04060 0.51 -2.1 833,443 - RR41_RS04060 0.54 -2.1 833,448 + RR41_RS04060 0.55 -0.4 833,460 + RR41_RS04060 0.56 +0.9 833,461 - RR41_RS04060 0.56 +0.5 833,461 - RR41_RS04060 0.56 -2.3 833,474 - RR41_RS04060 0.57 -1.5 833,564 - RR41_RS04060 0.65 -2.7 833,567 + RR41_RS04060 0.65 +1.5 833,568 - RR41_RS04060 0.65 -0.0 833,577 + RR41_RS04060 0.66 +1.4 833,578 - RR41_RS04060 0.66 +0.5 833,584 + RR41_RS04060 0.66 +1.7 833,630 - RR41_RS04060 0.70 -1.5 833,738 - RR41_RS04060 0.79 +1.0 833,866 + -1.5 833,881 - -1.1 834,003 - +3.0 834,023 + -1.1 834,109 - RR41_RS04065 0.13 +0.2 834,144 - RR41_RS04065 0.17 +0.5 834,200 + RR41_RS04065 0.23 +1.6 834,205 + RR41_RS04065 0.24 +2.8 834,209 + RR41_RS04065 0.24 +0.9 834,326 + RR41_RS04065 0.37 +3.9 834,396 + RR41_RS04065 0.45 +1.0 834,409 - RR41_RS04065 0.47 -1.7 834,496 - RR41_RS04065 0.57 -0.8 834,496 - RR41_RS04065 0.57 -1.1 834,552 + RR41_RS04065 0.63 -1.1 834,553 - RR41_RS04065 0.63 +0.5 834,679 - RR41_RS04065 0.77 -1.3 834,687 - RR41_RS04065 0.78 +0.9 834,689 + RR41_RS04065 0.78 +0.5 834,689 + RR41_RS04065 0.78 +2.0 834,695 - RR41_RS04065 0.79 +1.3 834,708 - RR41_RS04065 0.80 +0.5 834,730 - RR41_RS04065 0.83 +0.5 834,769 - RR41_RS04065 0.87 -1.5 834,814 + +1.0 834,857 + +1.4 834,880 + -1.5 834,881 - -1.4 834,968 + +0.5 834,969 - +1.3 834,970 + +0.5 834,978 - -2.3 835,031 + -0.5 835,098 - +0.3 835,108 + +1.0 835,126 - +1.7 835,152 + +3.8 835,201 - +0.9 835,203 - +0.5 835,280 - -0.5
Or see this region's nucleotide sequence