Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25685

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25675 and LU632_RS25680 are separated by 32 nucleotidesLU632_RS25680 and LU632_RS25685 are separated by 110 nucleotidesLU632_RS25685 and LU632_RS25690 overlap by 4 nucleotidesLU632_RS25690 and traJ overlap by 4 nucleotides LU632_RS25675: LU632_RS25675 - shufflon system plasmid conjugative transfer pilus tip adhesin PilV, at 64,208 to 65,599 _RS25675 LU632_RS25680: LU632_RS25680 - hypothetical protein, at 65,632 to 65,835 _RS25680 LU632_RS25685: LU632_RS25685 - DotD/TraH family lipoprotein, at 65,946 to 66,398 _RS25685 LU632_RS25690: LU632_RS25690 - type IV secretion system DotC family protein, at 66,395 to 67,183 _RS25690 LU632_RS25695: traJ - plasmid transfer ATPase TraJ, at 67,180 to 68,337 traJ Position (kb) 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 64.973 kb on - strand, within LU632_RS25675at 65.024 kb on + strand, within LU632_RS25675at 65.024 kb on + strand, within LU632_RS25675at 65.025 kb on - strand, within LU632_RS25675at 65.025 kb on - strand, within LU632_RS25675at 65.027 kb on - strand, within LU632_RS25675at 65.027 kb on - strand, within LU632_RS25675at 65.154 kb on + strand, within LU632_RS25675at 65.155 kb on - strand, within LU632_RS25675at 65.155 kb on - strand, within LU632_RS25675at 65.309 kb on + strand, within LU632_RS25675at 65.310 kb on - strand, within LU632_RS25675at 65.310 kb on - strand, within LU632_RS25675at 65.312 kb on - strand, within LU632_RS25675at 65.331 kb on + strand, within LU632_RS25675at 65.332 kb on + strand, within LU632_RS25675at 65.341 kb on - strand, within LU632_RS25675at 65.341 kb on - strand, within LU632_RS25675at 65.341 kb on - strand, within LU632_RS25675at 65.345 kb on - strand, within LU632_RS25675at 65.381 kb on + strand, within LU632_RS25675at 65.383 kb on + strand, within LU632_RS25675at 65.384 kb on - strand, within LU632_RS25675at 65.462 kb on - strandat 65.462 kb on - strandat 65.472 kb on - strandat 65.485 kb on + strandat 65.486 kb on - strandat 65.486 kb on - strandat 65.515 kb on - strandat 65.533 kb on + strandat 65.561 kb on + strandat 65.562 kb on - strandat 65.562 kb on - strandat 65.562 kb on - strandat 65.575 kb on + strandat 65.623 kb on + strandat 65.627 kb on + strandat 65.627 kb on + strandat 65.627 kb on + strandat 65.673 kb on + strand, within LU632_RS25680at 65.673 kb on + strand, within LU632_RS25680at 65.673 kb on + strand, within LU632_RS25680at 65.673 kb on + strand, within LU632_RS25680at 65.673 kb on + strand, within LU632_RS25680at 65.673 kb on + strand, within LU632_RS25680at 65.674 kb on - strand, within LU632_RS25680at 65.674 kb on - strand, within LU632_RS25680at 65.674 kb on - strand, within LU632_RS25680at 65.674 kb on - strand, within LU632_RS25680at 65.674 kb on - strand, within LU632_RS25680at 65.729 kb on + strand, within LU632_RS25680at 65.729 kb on + strand, within LU632_RS25680at 65.730 kb on - strand, within LU632_RS25680at 65.730 kb on - strand, within LU632_RS25680at 65.733 kb on + strand, within LU632_RS25680at 65.733 kb on + strand, within LU632_RS25680at 65.734 kb on - strand, within LU632_RS25680at 65.754 kb on - strand, within LU632_RS25680at 65.757 kb on + strand, within LU632_RS25680at 65.757 kb on + strand, within LU632_RS25680at 65.856 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.896 kb on + strandat 65.897 kb on - strandat 65.897 kb on - strandat 65.928 kb on - strandat 65.959 kb on - strandat 66.014 kb on + strand, within LU632_RS25685at 66.015 kb on - strand, within LU632_RS25685at 66.015 kb on - strand, within LU632_RS25685at 66.015 kb on - strand, within LU632_RS25685at 66.015 kb on - strand, within LU632_RS25685at 66.018 kb on - strand, within LU632_RS25685at 66.082 kb on - strand, within LU632_RS25685at 66.215 kb on + strand, within LU632_RS25685at 66.225 kb on + strand, within LU632_RS25685at 66.226 kb on - strand, within LU632_RS25685at 66.313 kb on + strand, within LU632_RS25685at 66.314 kb on - strand, within LU632_RS25685at 66.314 kb on - strand, within LU632_RS25685at 66.314 kb on - strand, within LU632_RS25685at 66.314 kb on - strand, within LU632_RS25685at 66.361 kb on - strandat 66.409 kb on - strandat 66.409 kb on - strandat 66.409 kb on - strandat 66.409 kb on - strandat 66.426 kb on + strandat 66.427 kb on - strandat 66.472 kb on + strandat 66.472 kb on + strandat 66.473 kb on - strandat 66.473 kb on - strandat 66.506 kb on + strand, within LU632_RS25690at 66.507 kb on - strand, within LU632_RS25690at 66.507 kb on - strand, within LU632_RS25690at 66.645 kb on - strand, within LU632_RS25690at 66.645 kb on - strand, within LU632_RS25690at 66.645 kb on - strand, within LU632_RS25690at 66.677 kb on + strand, within LU632_RS25690at 66.755 kb on + strand, within LU632_RS25690at 66.755 kb on + strand, within LU632_RS25690at 66.755 kb on + strand, within LU632_RS25690at 66.755 kb on + strand, within LU632_RS25690at 66.755 kb on + strand, within LU632_RS25690at 66.755 kb on + strand, within LU632_RS25690at 66.756 kb on - strand, within LU632_RS25690at 66.756 kb on - strand, within LU632_RS25690at 66.756 kb on - strand, within LU632_RS25690at 66.756 kb on - strand, within LU632_RS25690at 66.756 kb on - strand, within LU632_RS25690at 66.756 kb on - strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.757 kb on + strand, within LU632_RS25690at 66.758 kb on - strand, within LU632_RS25690at 66.758 kb on - strand, within LU632_RS25690at 66.758 kb on - strand, within LU632_RS25690at 66.758 kb on - strand, within LU632_RS25690at 66.758 kb on - strand, within LU632_RS25690at 66.760 kb on + strand, within LU632_RS25690at 66.760 kb on + strand, within LU632_RS25690at 66.760 kb on + strand, within LU632_RS25690at 66.760 kb on + strand, within LU632_RS25690at 66.760 kb on + strand, within LU632_RS25690at 66.760 kb on + strand, within LU632_RS25690at 66.760 kb on + strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.761 kb on - strand, within LU632_RS25690at 66.762 kb on + strand, within LU632_RS25690at 66.762 kb on + strand, within LU632_RS25690at 66.762 kb on + strand, within LU632_RS25690at 66.763 kb on - strand, within LU632_RS25690at 66.763 kb on - strand, within LU632_RS25690at 66.763 kb on - strand, within LU632_RS25690at 66.763 kb on - strand, within LU632_RS25690at 66.787 kb on + strand, within LU632_RS25690at 67.014 kb on + strand, within LU632_RS25690at 67.111 kb on + strandat 67.112 kb on - strandat 67.147 kb on + strandat 67.189 kb on - strandat 67.220 kb on + strandat 67.221 kb on - strandat 67.221 kb on - strandat 67.221 kb on - strandat 67.287 kb on - strandat 67.326 kb on + strand, within traJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
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64,973 - LU632_RS25675 0.55 -1.6
65,024 + LU632_RS25675 0.59 -1.5
65,024 + LU632_RS25675 0.59 -0.2
65,025 - LU632_RS25675 0.59 +0.4
65,025 - LU632_RS25675 0.59 -2.1
65,027 - LU632_RS25675 0.59 -0.8
65,027 - LU632_RS25675 0.59 -1.5
65,154 + LU632_RS25675 0.68 -1.8
65,155 - LU632_RS25675 0.68 -2.1
65,155 - LU632_RS25675 0.68 +0.5
65,309 + LU632_RS25675 0.79 +0.5
65,310 - LU632_RS25675 0.79 +0.5
65,310 - LU632_RS25675 0.79 +1.4
65,312 - LU632_RS25675 0.79 +0.3
65,331 + LU632_RS25675 0.81 -0.2
65,332 + LU632_RS25675 0.81 -0.3
65,341 - LU632_RS25675 0.81 -1.8
65,341 - LU632_RS25675 0.81 +1.1
65,341 - LU632_RS25675 0.81 +3.2
65,345 - LU632_RS25675 0.82 -1.1
65,381 + LU632_RS25675 0.84 -2.7
65,383 + LU632_RS25675 0.84 +0.4
65,384 - LU632_RS25675 0.84 +1.3
65,462 - -0.7
65,462 - +1.4
65,472 - -0.2
65,485 + -1.3
65,486 - -0.4
65,486 - +1.5
65,515 - +0.3
65,533 + -1.1
65,561 + +0.8
65,562 - -2.1
65,562 - -2.4
65,562 - +0.9
65,575 + +2.0
65,623 + -2.7
65,627 + -0.5
65,627 + -0.7
65,627 + +1.1
65,673 + LU632_RS25680 0.20 -1.6
65,673 + LU632_RS25680 0.20 +1.4
65,673 + LU632_RS25680 0.20 +2.1
65,673 + LU632_RS25680 0.20 +0.7
65,673 + LU632_RS25680 0.20 +0.7
65,673 + LU632_RS25680 0.20 -0.3
65,674 - LU632_RS25680 0.21 +0.7
65,674 - LU632_RS25680 0.21 +0.5
65,674 - LU632_RS25680 0.21 -0.7
65,674 - LU632_RS25680 0.21 -0.3
65,674 - LU632_RS25680 0.21 -0.4
65,729 + LU632_RS25680 0.48 -0.7
65,729 + LU632_RS25680 0.48 -0.9
65,730 - LU632_RS25680 0.48 -0.1
65,730 - LU632_RS25680 0.48 -1.1
65,733 + LU632_RS25680 0.50 +2.1
65,733 + LU632_RS25680 0.50 -2.1
65,734 - LU632_RS25680 0.50 -1.2
65,754 - LU632_RS25680 0.60 -0.4
65,757 + LU632_RS25680 0.61 +1.1
65,757 + LU632_RS25680 0.61 +1.3
65,856 + -1.6
65,896 + -0.5
65,896 + -0.3
65,896 + -0.5
65,896 + +0.3
65,896 + +0.3
65,896 + +1.5
65,896 + -0.5
65,896 + -0.7
65,896 + -0.5
65,896 + +2.8
65,897 - -1.7
65,897 - -1.8
65,928 - -1.3
65,959 - +1.9
66,014 + LU632_RS25685 0.15 +3.8
66,015 - LU632_RS25685 0.15 -3.7
66,015 - LU632_RS25685 0.15 +0.0
66,015 - LU632_RS25685 0.15 -0.7
66,015 - LU632_RS25685 0.15 +2.8
66,018 - LU632_RS25685 0.16 -0.6
66,082 - LU632_RS25685 0.30 -2.3
66,215 + LU632_RS25685 0.59 -2.3
66,225 + LU632_RS25685 0.62 +3.0
66,226 - LU632_RS25685 0.62 -0.5
66,313 + LU632_RS25685 0.81 +1.9
66,314 - LU632_RS25685 0.81 +0.2
66,314 - LU632_RS25685 0.81 -2.8
66,314 - LU632_RS25685 0.81 +1.8
66,314 - LU632_RS25685 0.81 +1.0
66,361 - -0.4
66,409 - -0.1
66,409 - -0.9
66,409 - +0.9
66,409 - -2.0
66,426 + -0.5
66,427 - +0.5
66,472 + -1.9
66,472 + -2.5
66,473 - +1.7
66,473 - +2.1
66,506 + LU632_RS25690 0.14 +1.1
66,507 - LU632_RS25690 0.14 +1.1
66,507 - LU632_RS25690 0.14 -1.9
66,645 - LU632_RS25690 0.32 +0.4
66,645 - LU632_RS25690 0.32 -1.1
66,645 - LU632_RS25690 0.32 +0.5
66,677 + LU632_RS25690 0.36 +0.1
66,755 + LU632_RS25690 0.46 +0.5
66,755 + LU632_RS25690 0.46 +0.4
66,755 + LU632_RS25690 0.46 -2.3
66,755 + LU632_RS25690 0.46 -1.1
66,755 + LU632_RS25690 0.46 -0.8
66,755 + LU632_RS25690 0.46 +1.3
66,756 - LU632_RS25690 0.46 -2.1
66,756 - LU632_RS25690 0.46 -1.5
66,756 - LU632_RS25690 0.46 -0.2
66,756 - LU632_RS25690 0.46 +3.0
66,756 - LU632_RS25690 0.46 -1.3
66,756 - LU632_RS25690 0.46 -0.8
66,757 + LU632_RS25690 0.46 +0.5
66,757 + LU632_RS25690 0.46 +0.1
66,757 + LU632_RS25690 0.46 -0.1
66,757 + LU632_RS25690 0.46 +0.5
66,757 + LU632_RS25690 0.46 -1.5
66,757 + LU632_RS25690 0.46 +0.5
66,757 + LU632_RS25690 0.46 -1.1
66,757 + LU632_RS25690 0.46 -1.1
66,758 - LU632_RS25690 0.46 +0.2
66,758 - LU632_RS25690 0.46 +0.3
66,758 - LU632_RS25690 0.46 +0.8
66,758 - LU632_RS25690 0.46 -0.2
66,758 - LU632_RS25690 0.46 +0.4
66,760 + LU632_RS25690 0.46 +2.4
66,760 + LU632_RS25690 0.46 -3.7
66,760 + LU632_RS25690 0.46 -2.2
66,760 + LU632_RS25690 0.46 +1.0
66,760 + LU632_RS25690 0.46 -0.7
66,760 + LU632_RS25690 0.46 -2.3
66,760 + LU632_RS25690 0.46 -0.1
66,761 - LU632_RS25690 0.46 -0.5
66,761 - LU632_RS25690 0.46 -2.3
66,761 - LU632_RS25690 0.46 +1.7
66,761 - LU632_RS25690 0.46 -1.4
66,761 - LU632_RS25690 0.46 +0.1
66,761 - LU632_RS25690 0.46 -2.0
66,761 - LU632_RS25690 0.46 +2.4
66,761 - LU632_RS25690 0.46 +0.7
66,761 - LU632_RS25690 0.46 -0.7
66,761 - LU632_RS25690 0.46 +1.2
66,761 - LU632_RS25690 0.46 +2.5
66,761 - LU632_RS25690 0.46 +1.6
66,761 - LU632_RS25690 0.46 +0.4
66,761 - LU632_RS25690 0.46 -2.1
66,762 + LU632_RS25690 0.47 -0.5
66,762 + LU632_RS25690 0.47 +2.5
66,762 + LU632_RS25690 0.47 -1.2
66,763 - LU632_RS25690 0.47 +1.7
66,763 - LU632_RS25690 0.47 +0.9
66,763 - LU632_RS25690 0.47 -0.4
66,763 - LU632_RS25690 0.47 -0.2
66,787 + LU632_RS25690 0.50 -1.1
67,014 + LU632_RS25690 0.78 +0.5
67,111 + -0.0
67,112 - -0.1
67,147 + -0.2
67,189 - +0.6
67,220 + -0.8
67,221 - +1.3
67,221 - -0.1
67,221 - +0.5
67,287 - -1.6
67,326 + traJ LU632_RS25695 0.13 +0.9

Or see this region's nucleotide sequence