Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25560 and LU632_RS25565 overlap by 4 nucleotides LU632_RS25565 and LU632_RS25570 are separated by 113 nucleotides LU632_RS25570 and LU632_RS25575 are separated by 190 nucleotides
LU632_RS25560: LU632_RS25560 - AAA family ATPase, at 41,769 to 42,395
_RS25560
LU632_RS25565: LU632_RS25565 - hypothetical protein, at 42,392 to 42,694
_RS25565
LU632_RS25570: LU632_RS25570 - ribbon-helix-helix domain-containing protein, at 42,808 to 42,987
_RS25570
LU632_RS25575: LU632_RS25575 - hypothetical protein, at 43,178 to 44,383
_RS25575
Position (kb) 42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 42.692 kb on + strand at 42.704 kb on - strand at 42.771 kb on - strand at 42.805 kb on - strand at 42.809 kb on + strand at 42.809 kb on + strand at 42.810 kb on - strand at 42.850 kb on + strand, within LU632_RS25570 at 42.850 kb on + strand, within LU632_RS25570 at 42.851 kb on - strand, within LU632_RS25570 at 42.900 kb on + strand, within LU632_RS25570 at 42.901 kb on - strand, within LU632_RS25570 at 42.901 kb on - strand, within LU632_RS25570 at 42.920 kb on - strand, within LU632_RS25570 at 42.952 kb on - strand, within LU632_RS25570 at 43.057 kb on - strand at 43.097 kb on + strand at 43.098 kb on - strand at 43.098 kb on - strand at 43.225 kb on + strand at 43.225 kb on + strand at 43.226 kb on - strand at 43.243 kb on + strand at 43.281 kb on - strand at 43.307 kb on - strand, within LU632_RS25575 at 43.307 kb on - strand, within LU632_RS25575 at 43.307 kb on - strand, within LU632_RS25575 at 43.332 kb on + strand, within LU632_RS25575 at 43.332 kb on + strand, within LU632_RS25575 at 43.332 kb on + strand, within LU632_RS25575 at 43.333 kb on - strand, within LU632_RS25575 at 43.333 kb on - strand, within LU632_RS25575 at 43.366 kb on + strand, within LU632_RS25575 at 43.367 kb on - strand, within LU632_RS25575 at 43.372 kb on + strand, within LU632_RS25575 at 43.372 kb on + strand, within LU632_RS25575 at 43.425 kb on + strand, within LU632_RS25575 at 43.426 kb on - strand, within LU632_RS25575 at 43.565 kb on + strand, within LU632_RS25575 at 43.566 kb on - strand, within LU632_RS25575 at 43.619 kb on + strand, within LU632_RS25575 at 43.619 kb on + strand, within LU632_RS25575 at 43.619 kb on + strand, within LU632_RS25575 at 43.620 kb on - strand, within LU632_RS25575 at 43.620 kb on - strand, within LU632_RS25575 at 43.620 kb on - strand, within LU632_RS25575 at 43.620 kb on - strand, within LU632_RS25575 at 43.622 kb on + strand, within LU632_RS25575 at 43.706 kb on + strand, within LU632_RS25575 at 43.707 kb on - strand, within LU632_RS25575 at 43.731 kb on + strand, within LU632_RS25575 at 43.731 kb on + strand, within LU632_RS25575 at 43.732 kb on - strand, within LU632_RS25575 at 43.732 kb on - strand, within LU632_RS25575 at 43.786 kb on + strand, within LU632_RS25575 at 43.786 kb on + strand, within LU632_RS25575 at 43.787 kb on - strand, within LU632_RS25575 at 43.790 kb on + strand, within LU632_RS25575 at 43.791 kb on - strand, within LU632_RS25575 at 43.791 kb on - strand, within LU632_RS25575 at 43.802 kb on + strand, within LU632_RS25575 at 43.802 kb on + strand, within LU632_RS25575 at 43.803 kb on - strand, within LU632_RS25575 at 43.803 kb on - strand, within LU632_RS25575 at 43.804 kb on + strand, within LU632_RS25575 at 43.805 kb on - strand, within LU632_RS25575 at 43.827 kb on + strand, within LU632_RS25575 at 43.827 kb on + strand, within LU632_RS25575 at 43.828 kb on - strand, within LU632_RS25575 at 43.828 kb on - strand, within LU632_RS25575 at 43.855 kb on + strand, within LU632_RS25575 at 43.855 kb on + strand, within LU632_RS25575 at 43.855 kb on + strand, within LU632_RS25575 at 43.856 kb on - strand, within LU632_RS25575 at 43.983 kb on - strand, within LU632_RS25575
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 42,692 + -0.7 42,704 - -0.4 42,771 - -0.0 42,805 - +0.5 42,809 + +0.8 42,809 + +0.8 42,810 - +0.1 42,850 + LU632_RS25570 0.23 +4.6 42,850 + LU632_RS25570 0.23 +2.9 42,851 - LU632_RS25570 0.24 +7.6 42,900 + LU632_RS25570 0.51 +4.5 42,901 - LU632_RS25570 0.52 +8.8 42,901 - LU632_RS25570 0.52 +4.8 42,920 - LU632_RS25570 0.62 +8.0 42,952 - LU632_RS25570 0.80 +9.4 43,057 - +0.4 43,097 + +1.7 43,098 - -1.8 43,098 - -0.6 43,225 + -0.8 43,225 + -1.1 43,226 - +0.1 43,243 + -0.5 43,281 - -1.4 43,307 - LU632_RS25575 0.11 +2.1 43,307 - LU632_RS25575 0.11 +1.7 43,307 - LU632_RS25575 0.11 +0.5 43,332 + LU632_RS25575 0.13 +2.2 43,332 + LU632_RS25575 0.13 -2.5 43,332 + LU632_RS25575 0.13 +1.2 43,333 - LU632_RS25575 0.13 -1.9 43,333 - LU632_RS25575 0.13 -2.1 43,366 + LU632_RS25575 0.16 +1.0 43,367 - LU632_RS25575 0.16 -0.5 43,372 + LU632_RS25575 0.16 +0.3 43,372 + LU632_RS25575 0.16 -0.9 43,425 + LU632_RS25575 0.20 +0.5 43,426 - LU632_RS25575 0.21 +0.3 43,565 + LU632_RS25575 0.32 -0.9 43,566 - LU632_RS25575 0.32 -0.2 43,619 + LU632_RS25575 0.37 +0.4 43,619 + LU632_RS25575 0.37 +0.5 43,619 + LU632_RS25575 0.37 -0.7 43,620 - LU632_RS25575 0.37 +0.3 43,620 - LU632_RS25575 0.37 -3.4 43,620 - LU632_RS25575 0.37 +0.5 43,620 - LU632_RS25575 0.37 +0.4 43,622 + LU632_RS25575 0.37 +0.2 43,706 + LU632_RS25575 0.44 -0.4 43,707 - LU632_RS25575 0.44 -0.7 43,731 + LU632_RS25575 0.46 -0.6 43,731 + LU632_RS25575 0.46 -0.7 43,732 - LU632_RS25575 0.46 +0.1 43,732 - LU632_RS25575 0.46 -1.9 43,786 + LU632_RS25575 0.50 -0.2 43,786 + LU632_RS25575 0.50 -0.5 43,787 - LU632_RS25575 0.50 +1.0 43,790 + LU632_RS25575 0.51 +0.1 43,791 - LU632_RS25575 0.51 +1.2 43,791 - LU632_RS25575 0.51 -0.4 43,802 + LU632_RS25575 0.52 +0.7 43,802 + LU632_RS25575 0.52 -0.6 43,803 - LU632_RS25575 0.52 +0.6 43,803 - LU632_RS25575 0.52 -0.3 43,804 + LU632_RS25575 0.52 +1.5 43,805 - LU632_RS25575 0.52 +1.4 43,827 + LU632_RS25575 0.54 +0.3 43,827 + LU632_RS25575 0.54 +1.0 43,828 - LU632_RS25575 0.54 +0.3 43,828 - LU632_RS25575 0.54 +3.3 43,855 + LU632_RS25575 0.56 +0.7 43,855 + LU632_RS25575 0.56 +0.9 43,855 + LU632_RS25575 0.56 +1.5 43,856 - LU632_RS25575 0.56 +1.2 43,983 - LU632_RS25575 0.67 -1.8
Or see this region's nucleotide sequence