Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS24360 and LU632_RS24365 are separated by 196 nucleotides LU632_RS24365 and LU632_RS24370 are separated by 80 nucleotides LU632_RS24370 and LU632_RS24375 are separated by 143 nucleotides LU632_RS24375 and tnpA are separated by 65 nucleotides tnpA and ilvC are separated by 179 nucleotides
LU632_RS24360: LU632_RS24360 - hypothetical protein, at 4,646,488 to 4,646,760
_RS24360
LU632_RS24365: LU632_RS24365 - IS6 family transposase, at 4,646,957 to 4,647,514
_RS24365
LU632_RS24370: LU632_RS24370 - IS91 family transposase, at 4,647,595 to 4,648,818
_RS24370
LU632_RS24375: LU632_RS24375 - IS6 family transposase, at 4,648,962 to 4,649,114
_RS24375
LU632_RS24380: tnpA - IS200/IS605 family transposase, at 4,649,180 to 4,649,486
tnpA
LU632_RS24385: ilvC - ketol-acid reductoisomerase, at 4,649,666 to 4,651,144
ilvC
Position (kb) 4647
4648
4649 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4646.798 kb on - strand at 4649.149 kb on + strand at 4649.203 kb on - strand at 4649.363 kb on - strand, within tnpA at 4649.363 kb on - strand, within tnpA at 4649.375 kb on - strand, within tnpA at 4649.430 kb on + strand, within tnpA at 4649.440 kb on + strand, within tnpA at 4649.450 kb on + strand, within tnpA at 4649.451 kb on - strand, within tnpA at 4649.451 kb on - strand, within tnpA at 4649.451 kb on - strand, within tnpA at 4649.453 kb on - strand, within tnpA at 4649.453 kb on - strand, within tnpA at 4649.453 kb on - strand, within tnpA at 4649.455 kb on - strand, within tnpA at 4649.455 kb on - strand, within tnpA at 4649.455 kb on - strand, within tnpA at 4649.683 kb on + strand at 4649.683 kb on + strand at 4649.703 kb on + strand at 4649.703 kb on + strand at 4649.703 kb on + strand at 4649.704 kb on - strand at 4649.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 4,646,798 - +1.0 4,649,149 + +2.0 4,649,203 - -0.6 4,649,363 - tnpA LU632_RS24380 0.60 +0.9 4,649,363 - tnpA LU632_RS24380 0.60 -0.0 4,649,375 - tnpA LU632_RS24380 0.64 -2.6 4,649,430 + tnpA LU632_RS24380 0.81 -0.6 4,649,440 + tnpA LU632_RS24380 0.85 +0.2 4,649,450 + tnpA LU632_RS24380 0.88 +0.6 4,649,451 - tnpA LU632_RS24380 0.88 -0.1 4,649,451 - tnpA LU632_RS24380 0.88 +0.3 4,649,451 - tnpA LU632_RS24380 0.88 +0.4 4,649,453 - tnpA LU632_RS24380 0.89 -1.6 4,649,453 - tnpA LU632_RS24380 0.89 -1.4 4,649,453 - tnpA LU632_RS24380 0.89 -0.8 4,649,455 - tnpA LU632_RS24380 0.90 +0.3 4,649,455 - tnpA LU632_RS24380 0.90 -0.9 4,649,455 - tnpA LU632_RS24380 0.90 -0.5 4,649,683 + +1.0 4,649,683 + +3.0 4,649,703 + +3.0 4,649,703 + +2.3 4,649,703 + +1.3 4,649,704 - -0.6 4,649,704 - -0.5
Or see this region's nucleotide sequence