Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24085

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
4,592,367	+	pldB	LU632_RS24080	0.24	+0.1
4,592,368	-	pldB	LU632_RS24080	0.24	-1.6
4,592,463	-	pldB	LU632_RS24080	0.34	-1.2
4,592,463	-	pldB	LU632_RS24080	0.34	+0.3
4,592,502	-	pldB	LU632_RS24080	0.37	+1.2
4,592,616	+	pldB	LU632_RS24080	0.49	-1.8
4,592,622	-	pldB	LU632_RS24080	0.50	+1.8
4,592,667	+	pldB	LU632_RS24080	0.54	+0.7
4,592,667	+	pldB	LU632_RS24080	0.54	+1.5
4,592,667	+	pldB	LU632_RS24080	0.54	+1.7
4,592,668	-	pldB	LU632_RS24080	0.54	+1.1
4,592,757	-	pldB	LU632_RS24080	0.63	-2.0
4,592,786	-	pldB	LU632_RS24080	0.66	-2.7
4,592,792	+	pldB	LU632_RS24080	0.67	+2.3
4,592,923	+	pldB	LU632_RS24080	0.80	-1.6
4,592,923	+	pldB	LU632_RS24080	0.80	+0.8
4,592,923	+	pldB	LU632_RS24080	0.80	+1.7
4,592,923	+	pldB	LU632_RS24080	0.80	+1.0
4,592,923	+	pldB	LU632_RS24080	0.80	+0.4
4,592,924	-	pldB	LU632_RS24080	0.80	-2.2
4,592,951	+	pldB	LU632_RS24080	0.83	-2.6
4,592,951	+	pldB	LU632_RS24080	0.83	-0.1
4,592,951	+	pldB	LU632_RS24080	0.83	+0.4
4,592,951	+	pldB	LU632_RS24080	0.83	+0.2
4,592,952	-	pldB	LU632_RS24080	0.83	+1.9
4,592,954	+	pldB	LU632_RS24080	0.83	+0.2
4,592,955	-	pldB	LU632_RS24080	0.83	-0.6
4,593,018	-	pldB	LU632_RS24080	0.89	+3.7
4,593,397	-	rhtB	LU632_RS24085	0.25	+1.2
4,593,669	+	rhtB	LU632_RS24085	0.69	+0.8
4,593,677	-	rhtB	LU632_RS24085	0.70	+0.4
4,593,683	+	rhtB	LU632_RS24085	0.71	-0.3
4,593,713	+	rhtB	LU632_RS24085	0.76	+0.3
4,593,713	+	rhtB	LU632_RS24085	0.76	-0.0
4,593,713	+	rhtB	LU632_RS24085	0.76	+1.9
4,593,714	-	rhtB	LU632_RS24085	0.76	+1.2
4,593,714	-	rhtB	LU632_RS24085	0.76	-0.0
4,593,714	-	rhtB	LU632_RS24085	0.76	-0.1
4,593,740	+	rhtB	LU632_RS24085	0.80	+4.6
4,593,741	-	rhtB	LU632_RS24085	0.81	-2.3
4,593,874	+				+3.7
4,593,875	-				+0.2
4,593,896	-				-0.6
4,593,896	-				+2.0
4,593,896	-				-0.7
4,593,901	+				+1.0
4,593,902	-				-1.4
4,593,908	+				-1.8
4,593,908	+				+1.0
4,593,908	+				+1.3
4,593,909	-				-1.9
4,593,909	-				-0.1
4,593,909	-				+2.2
4,593,939	+				+0.3
4,593,940	-				-0.9
4,593,940	-				-0.7
4,593,940	-				+0.4
4,594,217	-	rhtC	LU632_RS24090	0.47	-3.1
4,594,305	+	rhtC	LU632_RS24090	0.62	-1.0
4,594,305	+	rhtC	LU632_RS24090	0.62	+1.7
4,594,306	-	rhtC	LU632_RS24090	0.62	+0.1
4,594,306	-	rhtC	LU632_RS24090	0.62	-0.0
4,594,306	-	rhtC	LU632_RS24090	0.62	-0.4
4,594,309	+	rhtC	LU632_RS24090	0.62	+1.0
4,594,309	+	rhtC	LU632_RS24090	0.62	-0.3
4,594,310	-	rhtC	LU632_RS24090	0.63	+2.0
4,594,310	-	rhtC	LU632_RS24090	0.63	+1.9
4,594,310	-	rhtC	LU632_RS24090	0.63	-0.9
4,594,402	+	rhtC	LU632_RS24090	0.77	+1.0
4,594,402	+	rhtC	LU632_RS24090	0.77	-1.5
4,594,405	+	rhtC	LU632_RS24090	0.78	-0.1
4,594,405	+	rhtC	LU632_RS24090	0.78	+2.1
4,594,406	-	rhtC	LU632_RS24090	0.78	-0.1
4,594,406	-	rhtC	LU632_RS24090	0.78	-0.8
4,594,427	-	rhtC	LU632_RS24090	0.82	+0.2
4,594,427	-	rhtC	LU632_RS24090	0.82	+0.2
4,594,436	-	rhtC	LU632_RS24090	0.83	+0.4
4,594,536	-				-0.6
4,594,541	-				+1.0
4,594,541	-				-0.7
4,594,722	+				-2.2
4,594,723	-				-0.5
4,594,723	-				-0.2
4,594,723	-				+1.0
4,594,795	-	recQ	LU632_RS24095	0.13	+0.8
4,594,795	-	recQ	LU632_RS24095	0.13	+0.7
4,594,795	-	recQ	LU632_RS24095	0.13	+0.0
4,594,822	+	recQ	LU632_RS24095	0.14	-0.6
4,594,822	+	recQ	LU632_RS24095	0.14	-2.3