Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS23780 and LU632_RS23785 are separated by 188 nucleotides LU632_RS23785 and LU632_RS23790 are separated by 75 nucleotides LU632_RS23790 and LU632_RS23795 overlap by 4 nucleotides
LU632_RS23780: LU632_RS23780 - IS481 family transposase, at 4,537,632 to 4,538,672
_RS23780
LU632_RS23785: LU632_RS23785 - hypothetical protein, at 4,538,861 to 4,539,058
_RS23785
LU632_RS23790: LU632_RS23790 - DUF2612 domain-containing protein, at 4,539,134 to 4,539,787
_RS23790
LU632_RS23795: LU632_RS23795 - baseplate J/gp47 family protein, at 4,539,784 to 4,540,974
_RS23795
Position (kb) 4538
4539
4540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4538.724 kb on + strand at 4538.816 kb on + strand at 4538.816 kb on + strand at 4538.817 kb on - strand at 4538.817 kb on - strand at 4538.817 kb on - strand at 4538.819 kb on - strand at 4538.819 kb on - strand at 4538.873 kb on - strand at 4538.918 kb on - strand, within LU632_RS23785 at 4538.993 kb on - strand, within LU632_RS23785 at 4539.036 kb on + strand, within LU632_RS23785 at 4539.059 kb on - strand at 4539.059 kb on - strand at 4539.059 kb on - strand at 4539.122 kb on + strand at 4539.123 kb on - strand at 4539.187 kb on + strand at 4539.232 kb on - strand, within LU632_RS23790 at 4539.232 kb on - strand, within LU632_RS23790 at 4539.232 kb on - strand, within LU632_RS23790 at 4539.235 kb on + strand, within LU632_RS23790 at 4539.235 kb on + strand, within LU632_RS23790 at 4539.236 kb on - strand, within LU632_RS23790 at 4539.236 kb on - strand, within LU632_RS23790 at 4539.236 kb on - strand, within LU632_RS23790 at 4539.263 kb on - strand, within LU632_RS23790 at 4539.280 kb on + strand, within LU632_RS23790 at 4539.294 kb on - strand, within LU632_RS23790 at 4539.294 kb on - strand, within LU632_RS23790 at 4539.296 kb on + strand, within LU632_RS23790 at 4539.324 kb on + strand, within LU632_RS23790 at 4539.397 kb on - strand, within LU632_RS23790 at 4539.400 kb on + strand, within LU632_RS23790 at 4539.472 kb on + strand, within LU632_RS23790 at 4539.473 kb on - strand, within LU632_RS23790 at 4539.594 kb on + strand, within LU632_RS23790 at 4539.776 kb on - strand at 4539.777 kb on + strand at 4539.778 kb on - strand at 4539.819 kb on + strand at 4539.825 kb on + strand at 4539.825 kb on + strand at 4539.951 kb on - strand, within LU632_RS23795 at 4539.951 kb on - strand, within LU632_RS23795 at 4539.994 kb on - strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.041 kb on + strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795 at 4540.042 kb on - strand, within LU632_RS23795
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 4,538,724 + +0.2 4,538,816 + +0.9 4,538,816 + -1.0 4,538,817 - +0.8 4,538,817 - +0.3 4,538,817 - +1.4 4,538,819 - -0.2 4,538,819 - -0.5 4,538,873 - -0.7 4,538,918 - LU632_RS23785 0.29 +1.5 4,538,993 - LU632_RS23785 0.67 +2.8 4,539,036 + LU632_RS23785 0.88 -0.6 4,539,059 - -0.6 4,539,059 - -0.1 4,539,059 - -0.1 4,539,122 + -0.1 4,539,123 - +1.5 4,539,187 + -0.7 4,539,232 - LU632_RS23790 0.15 +0.6 4,539,232 - LU632_RS23790 0.15 -3.1 4,539,232 - LU632_RS23790 0.15 +1.2 4,539,235 + LU632_RS23790 0.15 +0.5 4,539,235 + LU632_RS23790 0.15 +0.2 4,539,236 - LU632_RS23790 0.16 +0.6 4,539,236 - LU632_RS23790 0.16 +0.5 4,539,236 - LU632_RS23790 0.16 +0.7 4,539,263 - LU632_RS23790 0.20 -0.8 4,539,280 + LU632_RS23790 0.22 +0.8 4,539,294 - LU632_RS23790 0.24 +0.7 4,539,294 - LU632_RS23790 0.24 +1.0 4,539,296 + LU632_RS23790 0.25 +0.7 4,539,324 + LU632_RS23790 0.29 +1.5 4,539,397 - LU632_RS23790 0.40 +1.0 4,539,400 + LU632_RS23790 0.41 -1.0 4,539,472 + LU632_RS23790 0.52 -0.3 4,539,473 - LU632_RS23790 0.52 +0.8 4,539,594 + LU632_RS23790 0.70 +1.0 4,539,776 - -0.3 4,539,777 + +0.5 4,539,778 - +0.7 4,539,819 + -0.4 4,539,825 + +0.6 4,539,825 + +0.1 4,539,951 - LU632_RS23795 0.14 +3.0 4,539,951 - LU632_RS23795 0.14 -0.2 4,539,994 - LU632_RS23795 0.18 -2.3 4,540,041 + LU632_RS23795 0.22 -0.2 4,540,041 + LU632_RS23795 0.22 -0.9 4,540,041 + LU632_RS23795 0.22 +1.8 4,540,041 + LU632_RS23795 0.22 -0.8 4,540,042 - LU632_RS23795 0.22 +0.5 4,540,042 - LU632_RS23795 0.22 -0.2 4,540,042 - LU632_RS23795 0.22 +0.8 4,540,042 - LU632_RS23795 0.22 -0.0
Or see this region's nucleotide sequence