Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfaF and rfaC overlap by 13 nucleotides rfaC and LU632_RS21930 are separated by 6 nucleotides LU632_RS21930 and LU632_RS21935 are separated by 42 nucleotides
LU632_RS21920: rfaF - ADP-heptose--LPS heptosyltransferase RfaF, at 4,186,918 to 4,187,979
rfaF
LU632_RS21925: rfaC - lipopolysaccharide heptosyltransferase RfaC, at 4,187,967 to 4,188,941
rfaC
LU632_RS21930: LU632_RS21930 - glycosyltransferase, at 4,188,948 to 4,189,865
_RS21930
LU632_RS21935: LU632_RS21935 - deacetylase, at 4,189,908 to 4,190,885
_RS21935
Position (kb) 4187
4188
4189 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4187.171 kb on - strand, within rfaF at 4187.776 kb on + strand, within rfaF at 4187.777 kb on - strand, within rfaF at 4188.007 kb on + strand at 4188.349 kb on - strand, within rfaC at 4188.395 kb on + strand, within rfaC at 4188.524 kb on + strand, within rfaC at 4188.524 kb on + strand, within rfaC at 4188.610 kb on + strand, within rfaC at 4188.610 kb on + strand, within rfaC at 4188.939 kb on + strand at 4188.999 kb on + strand at 4189.000 kb on - strand at 4189.011 kb on - strand at 4189.023 kb on - strand at 4189.023 kb on - strand at 4189.070 kb on + strand, within LU632_RS21930 at 4189.070 kb on + strand, within LU632_RS21930 at 4189.116 kb on + strand, within LU632_RS21930 at 4189.116 kb on + strand, within LU632_RS21930 at 4189.116 kb on + strand, within LU632_RS21930 at 4189.116 kb on + strand, within LU632_RS21930 at 4189.117 kb on - strand, within LU632_RS21930 at 4189.117 kb on - strand, within LU632_RS21930 at 4189.117 kb on - strand, within LU632_RS21930 at 4189.181 kb on + strand, within LU632_RS21930 at 4189.181 kb on + strand, within LU632_RS21930 at 4189.181 kb on + strand, within LU632_RS21930 at 4189.186 kb on - strand, within LU632_RS21930 at 4189.212 kb on + strand, within LU632_RS21930 at 4189.213 kb on - strand, within LU632_RS21930 at 4189.213 kb on - strand, within LU632_RS21930 at 4189.213 kb on - strand, within LU632_RS21930 at 4189.550 kb on + strand, within LU632_RS21930 at 4189.550 kb on + strand, within LU632_RS21930 at 4189.550 kb on + strand, within LU632_RS21930 at 4189.551 kb on - strand, within LU632_RS21930 at 4189.551 kb on - strand, within LU632_RS21930 at 4189.572 kb on + strand, within LU632_RS21930 at 4189.663 kb on + strand, within LU632_RS21930 at 4189.760 kb on - strand, within LU632_RS21930 at 4189.827 kb on - strand at 4189.827 kb on - strand at 4189.827 kb on - strand at 4189.846 kb on + strand at 4189.850 kb on + strand at 4189.850 kb on + strand at 4189.864 kb on - strand at 4189.919 kb on + strand at 4189.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1) remove 4,187,171 - rfaF LU632_RS21920 0.24 -2.2 4,187,776 + rfaF LU632_RS21920 0.81 +1.0 4,187,777 - rfaF LU632_RS21920 0.81 -1.4 4,188,007 + -1.9 4,188,349 - rfaC LU632_RS21925 0.39 +1.0 4,188,395 + rfaC LU632_RS21925 0.44 -1.4 4,188,524 + rfaC LU632_RS21925 0.57 +1.0 4,188,524 + rfaC LU632_RS21925 0.57 -1.6 4,188,610 + rfaC LU632_RS21925 0.66 +1.0 4,188,610 + rfaC LU632_RS21925 0.66 -1.0 4,188,939 + -1.7 4,188,999 + +0.2 4,189,000 - -2.2 4,189,011 - -1.0 4,189,023 - -1.9 4,189,023 - -2.2 4,189,070 + LU632_RS21930 0.13 -4.2 4,189,070 + LU632_RS21930 0.13 +0.2 4,189,116 + LU632_RS21930 0.18 -0.5 4,189,116 + LU632_RS21930 0.18 -0.0 4,189,116 + LU632_RS21930 0.18 -1.7 4,189,116 + LU632_RS21930 0.18 -0.9 4,189,117 - LU632_RS21930 0.18 -2.4 4,189,117 - LU632_RS21930 0.18 -0.9 4,189,117 - LU632_RS21930 0.18 +1.0 4,189,181 + LU632_RS21930 0.25 +1.0 4,189,181 + LU632_RS21930 0.25 +0.3 4,189,181 + LU632_RS21930 0.25 -4.2 4,189,186 - LU632_RS21930 0.26 -1.0 4,189,212 + LU632_RS21930 0.29 +0.5 4,189,213 - LU632_RS21930 0.29 -2.6 4,189,213 - LU632_RS21930 0.29 -3.4 4,189,213 - LU632_RS21930 0.29 -1.6 4,189,550 + LU632_RS21930 0.66 -1.4 4,189,550 + LU632_RS21930 0.66 +2.2 4,189,550 + LU632_RS21930 0.66 -0.0 4,189,551 - LU632_RS21930 0.66 -1.3 4,189,551 - LU632_RS21930 0.66 +1.7 4,189,572 + LU632_RS21930 0.68 +0.1 4,189,663 + LU632_RS21930 0.78 -1.1 4,189,760 - LU632_RS21930 0.88 +1.0 4,189,827 - +0.2 4,189,827 - +0.4 4,189,827 - -1.0 4,189,846 + -0.5 4,189,850 + -0.8 4,189,850 + -1.9 4,189,864 - +0.6 4,189,919 + +1.3 4,189,938 - -1.8
Or see this region's nucleotide sequence