Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21835

Experiment: Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Melon 1 Petiole 1 (TE2-S-M1-P1)
4,170,922	+		LU632_RS21830	0.35	+0.7
4,170,978	-		LU632_RS21830	0.40	+1.4
4,171,037	+		LU632_RS21830	0.46	+0.5
4,171,038	-		LU632_RS21830	0.47	+0.2
4,171,040	-		LU632_RS21830	0.47	-1.2
4,171,040	-		LU632_RS21830	0.47	+0.8
4,171,102	+		LU632_RS21830	0.53	+1.9
4,171,103	-		LU632_RS21830	0.53	-0.3
4,171,103	-		LU632_RS21830	0.53	+1.9
4,171,130	+		LU632_RS21830	0.56	-0.5
4,171,185	+		LU632_RS21830	0.61	-0.3
4,171,186	-		LU632_RS21830	0.61	-1.2
4,171,219	-		LU632_RS21830	0.65	-0.1
4,171,232	+		LU632_RS21830	0.66	-0.2
4,171,232	+		LU632_RS21830	0.66	+0.6
4,171,232	+		LU632_RS21830	0.66	+1.5
4,171,232	+		LU632_RS21830	0.66	+0.2
4,171,232	+		LU632_RS21830	0.66	-0.9
4,171,233	-		LU632_RS21830	0.66	-0.6
4,171,233	-		LU632_RS21830	0.66	+1.8
4,171,235	-		LU632_RS21830	0.66	-0.2
4,171,317	+		LU632_RS21830	0.75	-0.3
4,171,355	+		LU632_RS21830	0.78	-0.1
4,171,428	-		LU632_RS21830	0.86	-2.5
4,171,429	+		LU632_RS21830	0.86	-0.7
4,171,429	+		LU632_RS21830	0.86	+1.4
4,171,430	-		LU632_RS21830	0.86	-0.9
4,171,430	-		LU632_RS21830	0.86	+0.2
4,171,451	+		LU632_RS21830	0.88	+0.8
4,171,452	-		LU632_RS21830	0.88	+0.9
4,171,452	-		LU632_RS21830	0.88	-0.3
4,171,452	-		LU632_RS21830	0.88	+2.5
4,171,452	-		LU632_RS21830	0.88	+0.6
4,171,452	-		LU632_RS21830	0.88	-3.0
4,171,452	-		LU632_RS21830	0.88	-0.3
4,171,453	+		LU632_RS21830	0.88	-0.2
4,171,463	-		LU632_RS21830	0.89	-0.1
4,171,562	+				-0.3
4,171,563	-				-0.3
4,171,563	-				-1.8